Update - Bowtie: added quality score, mismatches, distance between reads and multiple alignment constraints. - Added stdout state update: total # of reads and percentages after each step. - Realistic example: containing sequences from chrM and rRNA with a mismatch in one of the reads.
Update
- Bowtie: added quality score, mismatches, distance between reads and multiple alignment constraints.
- Added stdout state update: total # of reads and percentages after each step.
- Realistic example: containing sequences from chrM and rRNA with a mismatch in one of the reads.

AgriLifeGenomicsANDBioinformatics/Testing-SEQC,AgriLifeGenomicsANDBioinformatics/Testing-SEQC,AgriLifeGenomicsANDBioinformatics/Testing-SEQC