1.0beta.18: Major release, integrating 5 months of dev branch.  Daemon mode, better multiple output supoprt, perf/bug fixes, call fewer indels, etc.
1.0beta.18: Major release, integrating 5 months of dev branch.  Daemon mode, better multiple output supoprt, perf/bug fixes, call fewer indels, etc.

amplab/snap,mr-c/snap,Blahah/snap,mr-c/snap,mr-c/snap,amplab/snap,Blahah/snap,amplab/snap,Blahah/snap