Script that will take the human-mouse ortholog pair and the human-rat ortholog pair for a given gene, fetch the orthology cds alignment from our homology database and print the coordinates of each exon in each sequence like this:
Script that will take the human-mouse ortholog pair and the human-rat ortholog pair for a given gene, fetch the orthology cds alignment from our homology database and print the coordinates of each exon in each sequence like this:

ENSE00001484009,1,31788598,1,67,31788664,67

where:

the first value is the exon_stable_id,
the second is the start in cdna coordinates (but no 5' utr),
the third is the start in chromosomic coordinates,
the fourth is the start in the pairwise alignment coordinates,

the fifth, sixth and seventh being the same but for the end value.

kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara,ckongEbi/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,dbolser-ebi/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara