Alternative templates now only used for non-fully aligned segments in alignment updates
Alternative templates now only used for non-fully aligned segments in alignment updates

cmunk/protwis,cmunk/protwis,protwis/protwis,protwis/protwis,fosfataza/protwis,cmunk/protwis,fosfataza/protwis,cmunk/protwis,protwis/protwis,fosfataza/protwis,fosfataza/protwis