Some experiments on CPU efficiency. NNLCBeagleImpl.java is a Java BeagleImpl which calls the NativeNucleotideLikelihoodCore (BEAST's old JNI library) directly for the 3 main calls (calculateStatesStates, calculateStatesPartials, calculatePartialsPartials). This JNI implementation is considerably faster than BEAGLE CPU.
Some experiments on CPU efficiency. NNLCBeagleImpl.java is a Java BeagleImpl which calls the NativeNucleotideLikelihoodCore (BEAST's old JNI library) directly for the 3 main calls (calculateStatesStates, calculateStatesPartials, calculatePartialsPartials). This JNI implementation is considerably faster than BEAGLE CPU.
luminwin/beast-mcmc,luminwin/beast-mcmc,luminwin/beast-mcmc,luminwin/beast-mcmc,luminwin/beast-mcmc