Update .codeclimate.yml for new advanced configuration
Update .codeclimate.yml for new advanced configuration

Upgrades to CodeClimate and/or its CLI broke our configuration.
Made changes specified by error messages from running CLI and from review of new [Advanced Configuration](https://docs.codeclimate.com/docs/advanced-configuration)

pellaea/mushroom-observer,MushroomObserver/mushroom-observer,pellaea/mushroom-observer,MushroomObserver/mushroom-observer,pellaea/mushroom-observer,JoeCohen/mushroom-observer,JoeCohen/mushroom-observer,pellaea/mushroom-observer,JoeCohen/mushroom-observer,pellaea/mushroom-observer,MushroomObserver/mushroom-observer,pellaea/mushroom-observer,JoeCohen/mushroom-observer,MushroomObserver/mushroom-observer,MushroomObserver/mushroom-observer,pellaea/mushroom-observer,JoeCohen/mushroom-observer,JoeCohen/mushroom-observer,MushroomObserver/mushroom-observer,MushroomObserver/mushroom-observer,JoeCohen/mushroom-observer