cnv_facets (#13457)
cnv_facets (#13457)

* First draft

* Restrict to linux

* Add snp-pileup dependency

* Do not use setup script

If some dependency is missing, edit meta.yaml or explicitly put
dependecies build.sh

* Install without setup.sh

* Fix R command

* Move test to meta.yaml

* Fix yaml line

* Test moved to build script to resolve #38177 (upload-linux)

* Install jsonlite in build script

After installation, argparse fails as it cannot find jsonlite (?!) so we
install jsonlite explicitly.

Version bumped so the version string from cnv_facets.R -v agrees with the
release version

* Try moving jsonlite from build to meta

This to try to resolve the error occurring *after* downloading
cnv_facets:

    cnv_facets.R -h
    Error: package or namespace load failed for ‘argparse’ in
    loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
    there is no package called ‘jsonlite’
    Execution halted

* Bump buld number

* Recipe for version 0.12.0

* Update to v0.12.1

* Update to version 1.15.0

* Test using -v and use bash

* Revert to sh

* Try with zlib

* Use bash script shipped with ASCIIGenome package

* Fix sed command

* Try sending sed output to dest dir directly

* Fix symplink

* Copy - do not symlink

* Add libgfortran - fix url

* Use c compiler

* Fix shasum

mdehollander/bioconda-recipes,bioconda/bioconda-recipes,ostrokach/bioconda-recipes,blankenberg/bioconda-recipes,peterjc/bioconda-recipes,rvalieris/bioconda-recipes,phac-nml/bioconda-recipes,saketkc/bioconda-recipes,saketkc/bioconda-recipes,bioconda/recipes,cokelaer/bioconda-recipes,zachcp/bioconda-recipes,peterjc/bioconda-recipes,phac-nml/bioconda-recipes,chapmanb/bioconda-recipes,shenwei356/bioconda-recipes,ivirshup/bioconda-recipes,blankenberg/bioconda-recipes,chapmanb/bioconda-recipes,peterjc/bioconda-recipes,rvalieris/bioconda-recipes,bioconda/bioconda-recipes,gregvonkuster/bioconda-recipes,ostrokach/bioconda-recipes,zachcp/bioconda-recipes,roryk/recipes,rvalieris/bioconda-recipes,zachcp/bioconda-recipes,npavlovikj/bioconda-recipes,npavlovikj/bioconda-recipes,acaprez/recipes,rob-p/bioconda-recipes,gregvonkuster/bioconda-recipes,Luobiny/bioconda-recipes,gregvonkuster/bioconda-recipes,joachimwolff/bioconda-recipes,ivirshup/bioconda-recipes,rob-p/bioconda-recipes,blankenberg/bioconda-recipes,npavlovikj/bioconda-recipes,ostrokach/bioconda-recipes,bioconda/bioconda-recipes,joachimwolff/bioconda-recipes,mdehollander/bioconda-recipes,rob-p/bioconda-recipes,chapmanb/bioconda-recipes,peterjc/bioconda-recipes,ivirshup/bioconda-recipes,saketkc/bioconda-recipes,ostrokach/bioconda-recipes,ivirshup/bioconda-recipes,rvalieris/bioconda-recipes,ostrokach/bioconda-recipes,Luobiny/bioconda-recipes,acaprez/recipes,mdehollander/bioconda-recipes,saketkc/bioconda-recipes,jfallmann/bioconda-recipes,saketkc/bioconda-recipes,cokelaer/bioconda-recipes,saketkc/bioconda-recipes,joachimwolff/bioconda-recipes,ivirshup/bioconda-recipes,rvalieris/bioconda-recipes,acaprez/recipes,bioconda/recipes,joachimwolff/bioconda-recipes,peterjc/bioconda-recipes,phac-nml/bioconda-recipes,bebatut/bioconda-recipes,mdehollander/bioconda-recipes,joachimwolff/bioconda-recipes,blankenberg/bioconda-recipes,chapmanb/bioconda-recipes,mdehollander/bioconda-recipes,rob-p/bioconda-recipes,rvalieris/bioconda-recipes,phac-nml/bioconda-recipes,jfallmann/bioconda-recipes,acaprez/recipes,npavlovikj/bioconda-recipes,bioconda/bioconda-recipes,roryk/recipes,cokelaer/bioconda-recipes,phac-nml/bioconda-recipes,ostrokach/bioconda-recipes,bebatut/bioconda-recipes,bebatut/bioconda-recipes,cokelaer/bioconda-recipes,mdehollander/bioconda-recipes,shenwei356/bioconda-recipes,roryk/recipes,shenwei356/bioconda-recipes,bioconda/recipes,shenwei356/bioconda-recipes,gregvonkuster/bioconda-recipes,jfallmann/bioconda-recipes,bebatut/bioconda-recipes,ivirshup/bioconda-recipes,Luobiny/bioconda-recipes,joachimwolff/bioconda-recipes,peterjc/bioconda-recipes,chapmanb/bioconda-recipes,jfallmann/bioconda-recipes,zachcp/bioconda-recipes,Luobiny/bioconda-recipes