Added Issues section to readme to highlight some potential issues with running included scripts that themselves trigger `git submodules update`s, which might introduce changes to themselves, or other included scripts they depend on.
Added Issues section to readme to highlight some potential issues with running included scripts that themselves trigger `git submodules update`s, which might introduce changes to themselves, or other included scripts they depend on.

loadsys/CakePHP-Shell-Scripts,loadsys/CakePHP-Shell-Scripts