The counters should also be updated when the worker is run with the -job_id parameter
The counters should also be updated when the worker is run with the -job_id parameter

NOTE: This should be backported to the previous branches, but the latter are missing increment_a_counter()

Ensembl/ensembl-hive,Ensembl/ensembl-hive,Ensembl/ensembl-hive,Ensembl/ensembl-hive