Avoid using pwd which fails on some shells. Inject current system install into path when checking for programs for installation into non-system paths
Avoid using pwd which fails on some shells. Inject current system install into path when checking for programs for installation into non-system paths

heuermh/cloudbiolinux,lpantano/cloudbiolinux,heuermh/cloudbiolinux,rchekaluk/cloudbiolinux,elkingtonmcb/cloudbiolinux,heuermh/cloudbiolinux,chapmanb/cloudbiolinux,lpantano/cloudbiolinux,elkingtonmcb/cloudbiolinux,rchekaluk/cloudbiolinux,kdaily/cloudbiolinux,chapmanb/cloudbiolinux,pjotrp/cloudbiolinux,AICIDNN/cloudbiolinux,pjotrp/cloudbiolinux,chapmanb/cloudbiolinux,lpantano/cloudbiolinux,chapmanb/cloudbiolinux,AICIDNN/cloudbiolinux,kdaily/cloudbiolinux,averagehat/cloudbiolinux,averagehat/cloudbiolinux,averagehat/cloudbiolinux,heuermh/cloudbiolinux,joemphilips/cloudbiolinux,AICIDNN/cloudbiolinux,rchekaluk/cloudbiolinux,elkingtonmcb/cloudbiolinux,rchekaluk/cloudbiolinux,kdaily/cloudbiolinux,averagehat/cloudbiolinux,joemphilips/cloudbiolinux,elkingtonmcb/cloudbiolinux,joemphilips/cloudbiolinux,joemphilips/cloudbiolinux,pjotrp/cloudbiolinux,AICIDNN/cloudbiolinux,kdaily/cloudbiolinux,pjotrp/cloudbiolinux