Attempt to make changes to be more like Pat's example
Attempt to make changes to be more like Pat's example

Comment out analysis chunks. Fix accompanying functions. Insert *.png
files with figure legends. Italicize latin bacterial names.

SchlossLab/Schubert_AbxD01_mBio_2015,SchlossLab/Schubert_AbxD01_mBio_2015,SchlossLab/Schubert_AbxD01_mBio_2015