Stop ignoring read2. This will mess with counts
Stop ignoring read2. This will mess with counts

tabbott/diagnose_dups,genome/diagnose_dups,genome/diagnose_dups,genome/diagnose_dups,tabbott/diagnose_dups,tabbott/diagnose_dups,fw1121/diagnose_dups,fw1121/diagnose_dups,tabbott/diagnose_dups,fw1121/diagnose_dups,fw1121/diagnose_dups,tabbott/diagnose_dups,fw1121/diagnose_dups,genome/diagnose_dups,genome/diagnose_dups,genome/diagnose_dups