main panel using the default_dir line from the Settings section of the conf file.  Also modified the script to properly create the conf file with all the values if needed
main panel using the default_dir line from the Settings section of the conf file.  Also modified the script to properly create the conf file with all the values if needed


Former-commit-id: b2e647e5def6f98de10bbc858fff3ea71c5c8fa0
phac-nml/irida-miseq-uploader,phac-nml/irida-miseq-uploader