Change hal2assemblyHub to stop renaming sequences with "." in the name
Change hal2assemblyHub to stop renaming sequences with "." in the name

The old default behavior can still be used with the option --ucscNames.

glennhickey/hal,glennhickey/hal,glennhickey/hal,glennhickey/hal,glennhickey/hal,glennhickey/hal,glennhickey/hal,glennhickey/hal