CNVkit: small segmentation, clonal calls, CIs
CNVkit: small segmentation, clonal calls, CIs

- Provide haar based segmentation in smaller target regions like panels
  where it seems to improve resolution.
- Only do clonal calling on germline samples based on recommendations
- Add better confidence interval bootstraps for assessing calls

vladsaveliev/bcbio-nextgen,biocyberman/bcbio-nextgen,brainstorm/bcbio-nextgen,brainstorm/bcbio-nextgen,brainstorm/bcbio-nextgen,biocyberman/bcbio-nextgen,vladsaveliev/bcbio-nextgen,a113n/bcbio-nextgen,lbeltrame/bcbio-nextgen,vladsaveliev/bcbio-nextgen,a113n/bcbio-nextgen,chapmanb/bcbio-nextgen,lbeltrame/bcbio-nextgen,chapmanb/bcbio-nextgen,biocyberman/bcbio-nextgen,a113n/bcbio-nextgen,lbeltrame/bcbio-nextgen,chapmanb/bcbio-nextgen