Laying base for the project.
Laying base for the project.

TaxIDMapper.py is a module devoted to map phylogenetic lineages onto files
containing sequences in FASTA format.

Done:
    > Parsing input files
    > Writing output files
    > Structure of the main class

TODO:
    > Create MongoDB for storing tables with phylogenetic information
        * Proposed structure:
            $ Sequence database table (e.g. NCBI's NR, Uniprot)
                protein accession -> full lineage
    > Connection to the database (by default MongoDB)
    > Retrieve phylogenetic information from database
    > Write database updating scripts

mkorycinski/BioTaxIDMapper