Changed all wording and variable names from "merge mate-pairs" to "paired-end join" since that seems to resonate better with the users.
Changed all wording and variable names from "merge mate-pairs" to "paired-end join" since that seems to resonate better with the users.

Added informative messages for any time a filename in the Inbox is colored red so that the user and developers know what the problem is right away.

Increased the level of Inbox feedback when operations are being performed so that users will know what's happening.

MG-RAST/MG-RAST,paczian/MG-RAST,MG-RAST/MG-RAST,wilke/MG-RAST,MG-RAST/MG-RAST,teharrison/MG-RAST,paczian/MG-RAST,wilke/MG-RAST,MG-RAST/MG-RAST,teharrison/MG-RAST,wilke/MG-RAST,wilke/MG-RAST,teharrison/MG-RAST,wilke/MG-RAST,wilke/MG-RAST,MG-RAST/MG-RAST,wilke/MG-RAST,paczian/MG-RAST,paczian/MG-RAST,teharrison/MG-RAST,teharrison/MG-RAST,teharrison/MG-RAST,paczian/MG-RAST,paczian/MG-RAST