Bugfix:  Truncated long sequence names.
Bugfix:  Truncated long sequence names.

Due to the format phylip which only supports 10 characters per sequence.
We added a mapping with temporary short names and than later on are
re-mapped to the original values.

Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara