I think that I;ve cracked the problem. My optimiser was optimising the CUMULATIVE score of the domain architecture given the model paramter. Not the position.
I think that I;ve cracked the problem. My optimiser was optimising the CUMULATIVE score of the domain architecture given the model paramter. Not the position.

adamsardar/perl-libs-custom,adamsardar/perl-libs-custom,adamsardar/perl-libs-custom,adamsardar/perl-libs-custom,adamsardar/perl-libs-custom