Refs #101019  Redo configure if conf.mk is older than any of the second-level makefiles.
Refs #101019  Redo configure if conf.mk is older than any of the second-level makefiles.

In particular, this avoids confusing the javasrc makefile.

svartika/ccnx,svartika/ccnx,svartika/ccnx,svartika/ccnx,svartika/ccnx,svartika/ccnx,svartika/ccnx