Ensure run process occurs in work directory. Provide sentinel for detecting end of process from docker driver script
Ensure run process occurs in work directory. Provide sentinel for detecting end of process from docker driver script

a113n/bcbio-nextgen,fw1121/bcbio-nextgen,a113n/bcbio-nextgen,hjanime/bcbio-nextgen,biocyberman/bcbio-nextgen,lpantano/bcbio-nextgen,guillermo-carrasco/bcbio-nextgen,SciLifeLab/bcbio-nextgen,elkingtonmcb/bcbio-nextgen,SciLifeLab/bcbio-nextgen,brainstorm/bcbio-nextgen,hjanime/bcbio-nextgen,lbeltrame/bcbio-nextgen,verdurin/bcbio-nextgen,Cyberbio-Lab/bcbio-nextgen,fw1121/bcbio-nextgen,gifford-lab/bcbio-nextgen,biocyberman/bcbio-nextgen,mjafin/bcbio-nextgen,a113n/bcbio-nextgen,lpantano/bcbio-nextgen,mjafin/bcbio-nextgen,gifford-lab/bcbio-nextgen,lpantano/bcbio-nextgen,brainstorm/bcbio-nextgen,lbeltrame/bcbio-nextgen,guillermo-carrasco/bcbio-nextgen,Cyberbio-Lab/bcbio-nextgen,elkingtonmcb/bcbio-nextgen,vladsaveliev/bcbio-nextgen,chapmanb/bcbio-nextgen,brainstorm/bcbio-nextgen,guillermo-carrasco/bcbio-nextgen,biocyberman/bcbio-nextgen,elkingtonmcb/bcbio-nextgen,lbeltrame/bcbio-nextgen,gifford-lab/bcbio-nextgen,chapmanb/bcbio-nextgen,chapmanb/bcbio-nextgen,fw1121/bcbio-nextgen,verdurin/bcbio-nextgen,verdurin/bcbio-nextgen,hjanime/bcbio-nextgen,vladsaveliev/bcbio-nextgen,vladsaveliev/bcbio-nextgen,mjafin/bcbio-nextgen,Cyberbio-Lab/bcbio-nextgen,SciLifeLab/bcbio-nextgen