Changed expected bowtie index file (from all to first); Enabled preseq-c_curve; Added preseq lc_extract support; Added output of bowtie log; Improved file names (populated through workflow); Added nthread support;
Changed expected bowtie index file (from all to first); Enabled preseq-c_curve; Added preseq lc_extract support; Added output of bowtie log; Improved file names (populated through workflow); Added nthread support;

Duke-GCB/GGR-cwl,Duke-GCB/GGR-cwl