Major overhauls to derivative directory hierarchy organization, added alternate namer.add_dirs method specifically for dwi, removed extraneous subdirectories, modified ndmg_dwi_pipeline to reflect these changes, modified register/gen_reg to take namer object and sort various intermediary files into either tmp/reg_a, tmp/reg_m, or the various dwi and anat preprocessing and register output directories.
Major overhauls to derivative directory hierarchy organization, added alternate namer.add_dirs method specifically for dwi, removed extraneous subdirectories, modified ndmg_dwi_pipeline to reflect these changes, modified register/gen_reg to take namer object and sort various intermediary files into either tmp/reg_a, tmp/reg_m, or the various dwi and anat preprocessing and register output directories.

neurodata/ndmg