improved how chromosomes are sorted so that supercontig_2 is right after supercontig_1
improved how chromosomes are sorted so that supercontig_2 is right after supercontig_1

asherkhb/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge