Improved if/else logic and made it so you only have to edit the list of file types in one location to update the script.
Improved if/else logic and made it so you only have to edit the list of file types in one location to update the script.

wgerlach/pipeline,teharrison/pipeline,MG-RAST/pipeline,teharrison/pipeline,wgerlach/pipeline,MG-RAST/pipeline,teharrison/pipeline,MG-RAST/pipeline,wgerlach/pipeline