Update are_queued_jobs_finished helper script
Update are_queued_jobs_finished helper script

Allow the helper script to deal with timed out tests.

Closes #11520

andrsd/moose,YaqiWang/moose,permcody/moose,sapitts/moose,andrsd/moose,idaholab/moose,dschwen/moose,SudiptaBiswas/moose,laagesen/moose,idaholab/moose,harterj/moose,milljm/moose,nuclear-wizard/moose,bwspenc/moose,bwspenc/moose,laagesen/moose,SudiptaBiswas/moose,sapitts/moose,dschwen/moose,andrsd/moose,lindsayad/moose,milljm/moose,idaholab/moose,bwspenc/moose,andrsd/moose,jessecarterMOOSE/moose,jessecarterMOOSE/moose,harterj/moose,laagesen/moose,laagesen/moose,harterj/moose,jessecarterMOOSE/moose,lindsayad/moose,bwspenc/moose,nuclear-wizard/moose,sapitts/moose,jessecarterMOOSE/moose,permcody/moose,YaqiWang/moose,permcody/moose,laagesen/moose,harterj/moose,idaholab/moose,YaqiWang/moose,YaqiWang/moose,SudiptaBiswas/moose,idaholab/moose,sapitts/moose,milljm/moose,lindsayad/moose,dschwen/moose,harterj/moose,dschwen/moose,dschwen/moose,jessecarterMOOSE/moose,nuclear-wizard/moose,andrsd/moose,sapitts/moose,permcody/moose,SudiptaBiswas/moose,milljm/moose,lindsayad/moose,bwspenc/moose,SudiptaBiswas/moose,lindsayad/moose,nuclear-wizard/moose,milljm/moose