Cleanup the code and doc
Cleanup the code and doc

willmclaren/ensembl-variation,willmclaren/ensembl-variation,willmclaren/ensembl-variation,Ensembl/ensembl-variation,willmclaren/ensembl-variation,Ensembl/ensembl-variation,Ensembl/ensembl-variation,Ensembl/ensembl-variation,Ensembl/ensembl-variation,willmclaren/ensembl-variation