remove deprecated calls
remove deprecated calls

james-monkeyshines/ensembl,james-monkeyshines/ensembl,Ensembl/ensembl,muffato/ensembl,james-monkeyshines/ensembl,Ensembl/ensembl,muffato/ensembl,danstaines/ensembl,Ensembl/ensembl,james-monkeyshines/ensembl,Ensembl/ensembl,muffato/ensembl,muffato/ensembl,danstaines/ensembl,danstaines/ensembl