	modified:   fastq.join.sh 	deleted:    .nreads 	deleted:    alignment.count_nongappy_columns.sh 	deleted:    go.gatk2.pbs.o2609779
	modified:   fastq.join.sh
	deleted:    .nreads
	deleted:    alignment.count_nongappy_columns.sh
	deleted:    go.gatk2.pbs.o2609779

naumenko-sa/bioscripts,naumenko-sa/bioscripts,naumenko-sa/bioscripts,naumenko-sa/bioscripts,naumenko-sa/bioscripts,naumenko-sa/bioscripts