modify temp file generation to not use OOP methods in favor of tempfile function; return TIR classification directory from classifytirs method so the tirage method can find the elements; minor formatting of folding/spacing for consistency; move temp GFF3 file generation from FASTA combining routine; add check to see if all GFF3 files are non-empty before sorting and combining;
modify temp file generation to not use OOP methods in favor of tempfile function;
return TIR classification directory from classifytirs method so the tirage method can find the elements;
minor formatting of folding/spacing for consistency;
move temp GFF3 file generation from FASTA combining routine;
add check to see if all GFF3 files are non-empty before sorting and combining;

sestaton/tephra,sestaton/tephra,sestaton/tephra