Corrections and test data
Corrections and test data

* fix a bunch of examples where the filenames do not match between provided samples and command-line calls
* provide data for workflows
* fix a reference to JSON when YML is provided
* a typo or two
SciDAP/cwltool,StarvingMarvin/common-workflow-language,common-workflow-language/common-workflow-language,mr-c/common-workflow-language,ohsu-computational-biology/common-workflow-language,StarvingMarvin/common-workflow-language,chapmanb/cwltool,chapmanb/cwltool,dleehr/cwltool,SciDAP/cwltool,ohsu-computational-biology/common-workflow-language,dleehr/cwltool,stain/common-workflow-language,curoverse/common-workflow-language,dleehr/common-workflow-language,ohsu-computational-biology/common-workflow-language,StarvingMarvin/common-workflow-language,chapmanb/cwltool,SciDAP/cwltool,hmenager/common-workflow-language,stain/common-workflow-language,common-workflow-language/common-workflow-language,hmenager/common-workflow-language,common-workflow-language/cwltool,jeremiahsavage/cwltool,StarvingMarvin/common-workflow-language,dleehr/common-workflow-language,jeremiahsavage/cwltool,curoverse/common-workflow-language,hmenager/common-workflow-language,common-workflow-language/cwltool,hmenager/common-workflow-language,stain/common-workflow-language,chapmanb/cwltool,stain/common-workflow-language,dleehr/common-workflow-language,SciDAP/cwltool,mr-c/common-workflow-language,common-workflow-language/common-workflow-language,common-workflow-language/cwltool,dleehr/cwltool,mr-c/common-workflow-language,dleehr/cwltool,jeremiahsavage/cwltool,jeremiahsavage/cwltool,common-workflow-language/common-workflow-language,dleehr/common-workflow-language