Modified several tests to use blast_align_unaligned_seqs rather than other pairwise aligners when the choice of pairwise aligner is not relevant to the test. This will all important tests to run when users don't have other pairwise installers available, and will allow tests to run in much shorter time if users don't have PyCogent's Cython code compiled. (The latter was a problem because one test called pair_hmm_align_unaligned_seqs on a large sequence.)
Modified several tests to use blast_align_unaligned_seqs rather than other pairwise aligners when the choice of pairwise aligner is not relevant to the test. This will all important tests to run when users don't have other pairwise installers available, and will allow tests to run in much shorter time if users don't have PyCogent's Cython code compiled. (The latter was a problem because one test called pair_hmm_align_unaligned_seqs on a large sequence.)


biocore/pynast