Update Files in Installer (#1275)
Update Files in Installer (#1275)

* added setup

* deleted debug files

* deleted all

* deleted all

* obj deleted cache

* obj cleared

* deleted package

* hmphm

* deleted

* ah

* remove

* remove wax

* Hmphjm

* sln

* Release?

* Update MetaMorpheus.sln

* Update MetaMorpheus.sln

* ff

* haha

* mkay

* OutputNoice

* haha

* aha

* uhum

* hmph

* Noice

* Fixes

* version check

* 205 with auto_update

* added features

* Auto_Update

* installer updated

* Aha

* Yah

* Uhum

* uhum

* Wooh

* revert

* minor

* uhum

* Remove unused

* noice

* noice

* codemaid

* Yah

* Cleaner

* noice

* hm

* installer

* installer

* checkbox

* Added Unimod Menu Bar

* added features: installer, do_not_remind and Update Unimods

* remove weird

* weird

* hm

* hm

* Cleaned up

* add settings

* add modslocation

* Git final

* restore

* plz solve conflict

* fied indent

* Violent installer

* indenting fixed

* A Decent Installer

* Fix menu option

* Simplify updater

* Update Product.wxs

* Debug travis

* Gah

* Environment.GetFolderPath(Environment.SpecialFolder.ProgramFiles)

* yah

* Noice

* Simplify

* datadir menu option

* Updated to Origin

* MetaUpdater

Added release notes

* Meta Updater

* Cleanup

* clean_up and Update

* desktop sc

* package code fix

* commented with Codacy

checked errors and warnings on Codacy. All minor things.

* Update TestScan.cs

* fix

* Update TestScan.cs

* Update TestScan.cs

* Large file test command backup

* Update command

* okay

* Fix a few

* Mkay

* Update to Curr -- Appveyor

* Set to release

* Added Encrypted Cert

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update appveyor.yml

* Update

* update

* Update CalibrationTask.cs

* Update CalibrationTask.cs

* yah

* Bootstraper

* cleanup

* sln fix

* bootin

* Update MetaMorpheus.sln

* Update MetaMorpheus.sln

* bundle compile

* Update MetaMorpheus.sln

* Uhum

* Hmhp

* aha

* fixup

* yeah

* yeah

* update to upstream

* XL Different crosslink sites

* XL crosslink different amino acid GUI

* XL Improve codeCov

* XL Improve CodeCov2

* XL test Target 90% coverage

* XLTest Target 90% coverage2

* XLTest Target 90% coverage3

* XL pep.XML mod position N ter refer as 0

* XL test diff crosslink site

* Optimize xltest code

* XL improve code quality

* XL GenerateIntensityRanks() bug

* Output pep.XML for Search Task

* pepXML works for Search Task

* pep.xml works for TPP now!

* pep.xml Search Engine Tandom

* Update pep.XML

* PepXML update

* PepXMLWriter Class

* Remove useless library pepxml

* Add Quantification Setting Window

* QuanSetGUI

* Start RealTime GUI project

* Data Collect

* Connection bug

* Notification Event

* Updata DataReceiver Notification

* Dispatcher BeginInvoke

* Add MetaDraw into MetaMorpheus

* MetaDraw using MsDataFile

* Data Receiver by TbNotification

* Add Realtime database

* dd

* clear

* cleanup

dd

* RealTime add parameter

* Success generate ion index for real time

* Check Thread

* Add log4net

* log in DataReceiver

* DataReceiver cannot have logWatcher

* Try BeginInvoke

* LogWatcher BeginInvoke

* Add Notification

* Add Dump

* check Notification 2nd

* try DataReceiver.Notifications

* metadraw

* no sense

* sync

* Update Installer

smith-chem-wisc/MetaMorpheus,zrolfs/MetaMorpheus,lschaffer2/MetaMorpheus,lonelu/MetaMorpheus,rmillikin/MetaMorpheus,XRSHEERAN/MetaMorpheus