bugfix: was doing max() instead of min() in determining which chunk to split the alignment files into
bugfix: was doing max() instead of min() in determining which chunk to
split the alignment files into

thammegowda/incubator-joshua,fhieber/incubator-joshua,kpu/joshua,kpu/joshua,gwenniger/joshua,kpu/joshua,kpu/joshua,lukeorland/joshua,fhieber/incubator-joshua,lukeorland/joshua,lukeorland/joshua,fhieber/incubator-joshua,fhieber/incubator-joshua,thammegowda/incubator-joshua,lukeorland/joshua,gwenniger/joshua,thammegowda/incubator-joshua,lukeorland/joshua,thammegowda/incubator-joshua,kpu/joshua,gwenniger/joshua,thammegowda/incubator-joshua,fhieber/incubator-joshua,thammegowda/incubator-joshua,gwenniger/joshua,lukeorland/joshua,thammegowda/incubator-joshua,lukeorland/joshua,thammegowda/incubator-joshua,gwenniger/joshua,fhieber/incubator-joshua,thammegowda/incubator-joshua,fhieber/incubator-joshua,kpu/joshua,fhieber/incubator-joshua,fhieber/incubator-joshua,lukeorland/joshua,lukeorland/joshua,thammegowda/incubator-joshua,gwenniger/joshua