remove old lumpyToBedpe script, now that lumpy produces VCF
remove old lumpyToBedpe script, now that lumpy produces VCF

abelhj/svtools,hall-lab/svtools,hall-lab/svtools,abelhj/svtools,ernfrid/svtools,hall-lab/svtools,abelhj/svtools,abelhj/svtools,ernfrid/svtools