Main script: Bugfix: Do full analysis if no --only or --exclude flags
Main script: Bugfix: Do full analysis if no --only or --exclude flags

Since --only and --exclude are optional flags, default should
be full analysis.

Signed-off-by: Jussi Auvinen <16b8c81f9479dec4f5eedf7ae5a2413c6a10bc13@phy.duke.edu>

jauvinen/hybrid-model-analysis