REF: removed some deprecated parameters
REF: removed some deprecated parameters

Former-commit-id: 2101d7f594b2db7c300f54473978e4430f74a94d
Former-commit-id: 77b834ab9572f81596189dc847d1b71e063112e3
3324fr/spinalcordtoolbox,3324fr/spinalcordtoolbox,3324fr/spinalcordtoolbox,3324fr/spinalcordtoolbox,3324fr/spinalcordtoolbox,3324fr/spinalcordtoolbox,3324fr/spinalcordtoolbox