Add overload of SequenceUtil.calculateSamNmTag that doesn't require the entire reference sequence, but just the chunk overlapping the read.
Add overload of SequenceUtil.calculateSamNmTag that doesn't require the entire reference sequence, but just the chunk overlapping the read.

broadinstitute/picard,broadinstitute/picard,alecw/picard,nh13/picard,annkupi/picard,nh13/picard,alecw/picard,nh13/picard,broadinstitute/picard,annkupi/picard,nh13/picard,annkupi/picard,broadinstitute/picard,broadinstitute/picard,alecw/picard,annkupi/picard,alecw/picard