make vapor take collection as input (#4843)
make vapor take collection as input (#4843)

* update file inputs and output name

* update output names

* add compressed input test case

* bump to +galaxy1

* fix multiple fq files and file extension

* simplify compressed file extension check

* make vapor take collection as input

* fix forward pair

* Update tools/vapor/vapor.xml

Co-authored-by: Wolfgang Maier <41a634603accdc2bc8510e4fa298db2ee1c67ba7@posteo.de>

* Update tools/vapor/vapor.xml

Co-authored-by: Wolfgang Maier <41a634603accdc2bc8510e4fa298db2ee1c67ba7@posteo.de>

* small fixes

Co-authored-by: Wolfgang Maier <41a634603accdc2bc8510e4fa298db2ee1c67ba7@posteo.de>
pavanvidem/tools-iuc,loraine-gueguen/tools-iuc,galaxyproject/tools-iuc,pavanvidem/tools-iuc,gregvonkuster/tools-iuc,galaxyproject/tools-iuc,nsoranzo/tools-iuc,loraine-gueguen/tools-iuc,gregvonkuster/tools-iuc,galaxyproject/tools-iuc,pavanvidem/tools-iuc,pavanvidem/tools-iuc,nsoranzo/tools-iuc,pavanvidem/tools-iuc,galaxyproject/tools-iuc,nsoranzo/tools-iuc,nsoranzo/tools-iuc,nsoranzo/tools-iuc,loraine-gueguen/tools-iuc,loraine-gueguen/tools-iuc,gregvonkuster/tools-iuc,galaxyproject/tools-iuc,nsoranzo/tools-iuc,pavanvidem/tools-iuc,galaxyproject/tools-iuc,loraine-gueguen/tools-iuc,gregvonkuster/tools-iuc,pavanvidem/tools-iuc,loraine-gueguen/tools-iuc,loraine-gueguen/tools-iuc,gregvonkuster/tools-iuc,gregvonkuster/tools-iuc,gregvonkuster/tools-iuc,nsoranzo/tools-iuc,galaxyproject/tools-iuc