calculate read depth for both reference and alternate breakpoints in the same command filtering for the best alignments.
calculate read depth for both reference and alternate breakpoints in the same command filtering for the best alignments.

EichlerLab/pacbio_variant_caller,EichlerLab/pacbio_variant_caller,EichlerLab/pacbio_variant_caller,EichlerLab/pacbio_variant_caller,EichlerLab/pacbio_variant_caller