changed defaults of option paramters that had reverse logic
changed defaults of option paramters that had reverse logic

fw1121/DRISEE,MG-RAST/DRISEE,fw1121/DRISEE,fw1121/DRISEE,MG-RAST/DRISEE,MG-RAST/DRISEE,fw1121/DRISEE,MG-RAST/DRISEE