changed logic so this is a semi-automated tool.  Also it now pulls all needed clutches and prints them for the user with 'bsub' commands which then the user can choose to run or modify
changed logic so this is a semi-automated tool.  Also it now pulls all
needed clutches and prints them for the user with 'bsub' commands which
then the user can choose to run or modify

Ensembl/ensembl-hive,Ensembl/ensembl-hive,Ensembl/ensembl-hive,Ensembl/ensembl-hive