Committing preliminary changes to generate_fragments.py (creating the residue mapping file) so that Kale can add new PDBs options and avoid merge headaches.
Committing preliminary changes to generate_fragments.py (creating the residue mapping file) so that Kale can add new PDBs options and avoid merge headaches.

Kortemme-Lab/klab,Kortemme-Lab/klab,Kortemme-Lab/klab,Kortemme-Lab/klab