more edits to fix incorrect flags
more edits to fix incorrect flags

mwschmit/Duplex-Sequencing,raj76/Duplex-Sequencing,raj76/Duplex-Sequencing,loeblab/Duplex-Sequencing,raj76/Duplex-Sequencing,mwschmit/Duplex-Sequencing,loeblab/Duplex-Sequencing,loeblab/Duplex-Sequencing