- Update Link class with names for the + and - links - Remove the compress_ands option (we never compress them) - Revisit the attr_dict in add_edge, add_node. This is not an easy task and will probably   need other iterations but this is a progress compared to the previous version.   attributes can for instance be passed to add_reaction() method now. - add method called is_reaction_in to check if a reactions is present in the grpah - add_edges_from is now calling add_edge - add _get_and_attribute method - add _update_and_gate_names to fix https://github.com/cellnopt/cellnopt/issues/38 - add  signed_predecessors method - add set_node_attributes method - add set_edge_visibility_from_reactions method - add edge2reaction method - remove_edges_from now calls remove_edge method - rename_nodes renamed into relabel_nodes (to be similar to the networkx syntax) - rename_node/relabel_nodes was updated/simplified
- Update Link class with names for the + and - links
- Remove the compress_ands option (we never compress them)
- Revisit the attr_dict in add_edge, add_node. This is not an easy task and will probably
  need other iterations but this is a progress compared to the previous version.
  attributes can for instance be passed to add_reaction() method now.
- add method called is_reaction_in to check if a reactions is present in the grpah
- add_edges_from is now calling add_edge
- add _get_and_attribute method
- add _update_and_gate_names to fix https://github.com/cellnopt/cellnopt/issues/38
- add  signed_predecessors method
- add set_node_attributes method
- add set_edge_visibility_from_reactions method
- add edge2reaction method
- remove_edges_from now calls remove_edge method
- rename_nodes renamed into relabel_nodes (to be similar to the networkx syntax)
- rename_node/relabel_nodes was updated/simplified

cellnopt/cellnopt,cellnopt/cellnopt