Console log format drops logger name. Help specifies more defaults, using %default. Fix up extracting non default options and fix printing those.
Console log format drops logger name. Help specifies more defaults, using %default. Fix up extracting non default options and fix printing those.

ahelsing/geni-tools,ahelsing/geni-tools,tcmitchell/geni-tools,plantigrade/geni-tools,plantigrade/geni-tools,tcmitchell/geni-tools