* jar files (e.g. jalview.jar) can be included in plugin dirs;
* jar files (e.g. jalview.jar) can be included in plugin dirs;

Ensembl/public-plugins,Ensembl/public-plugins,muffato/public-plugins,muffato/public-plugins,muffato/public-plugins,muffato/public-plugins,Ensembl/public-plugins