CLI: print options in appropriately sorted order.
CLI: print options in appropriately sorted order.

tkrishp/Hadoop-BAM,fnothaft/Hadoop-BAM,HadoopGenomics/Hadoop-BAM,cmnbroad/Hadoop-BAM,HadoopGenomics/Hadoop-BAM,ryan-williams/Hadoop-BAM,fnothaft/Hadoop-BAM,HadoopGenomics/Hadoop-BAM,cmnbroad/Hadoop-BAM,fnothaft/Hadoop-BAM,tomwhite/Hadoop-BAM,ryan-williams/Hadoop-BAM