Improve delly runtimes by avoiding processing on fully masked chromosomes. Merge nearby excluded repetitive regions to avoid trying to call around complex regions
Improve delly runtimes by avoiding processing on fully masked chromosomes. Merge nearby excluded repetitive regions to avoid trying to call around complex regions

mjafin/bcbio-nextgen,verdurin/bcbio-nextgen,vladsaveliev/bcbio-nextgen,mjafin/bcbio-nextgen,Cyberbio-Lab/bcbio-nextgen,lbeltrame/bcbio-nextgen,hjanime/bcbio-nextgen,gifford-lab/bcbio-nextgen,chapmanb/bcbio-nextgen,verdurin/bcbio-nextgen,guillermo-carrasco/bcbio-nextgen,brainstorm/bcbio-nextgen,biocyberman/bcbio-nextgen,a113n/bcbio-nextgen,brainstorm/bcbio-nextgen,lpantano/bcbio-nextgen,mjafin/bcbio-nextgen,fw1121/bcbio-nextgen,elkingtonmcb/bcbio-nextgen,chapmanb/bcbio-nextgen,elkingtonmcb/bcbio-nextgen,SciLifeLab/bcbio-nextgen,gifford-lab/bcbio-nextgen,SciLifeLab/bcbio-nextgen,hjanime/bcbio-nextgen,guillermo-carrasco/bcbio-nextgen,brainstorm/bcbio-nextgen,lpantano/bcbio-nextgen,verdurin/bcbio-nextgen,fw1121/bcbio-nextgen,lbeltrame/bcbio-nextgen,guillermo-carrasco/bcbio-nextgen,vladsaveliev/bcbio-nextgen,SciLifeLab/bcbio-nextgen,biocyberman/bcbio-nextgen,a113n/bcbio-nextgen,elkingtonmcb/bcbio-nextgen,vladsaveliev/bcbio-nextgen,a113n/bcbio-nextgen,fw1121/bcbio-nextgen,gifford-lab/bcbio-nextgen,lbeltrame/bcbio-nextgen,Cyberbio-Lab/bcbio-nextgen,lpantano/bcbio-nextgen,chapmanb/bcbio-nextgen,hjanime/bcbio-nextgen,biocyberman/bcbio-nextgen,Cyberbio-Lab/bcbio-nextgen