Sort out fallout after adding strict and warning pragmas, and do formatting.
Sort out fallout after adding strict and warning pragmas, and do formatting.

james-monkeyshines/ensembl-analysis,james-monkeyshines/ensembl-analysis,kiwiroy/ensembl-analysis,Ensembl/ensembl-analysis,Ensembl/ensembl-analysis,james-monkeyshines/ensembl-analysis,kiwiroy/ensembl-analysis,mn1/ensembl-analysis,Ensembl/ensembl-analysis,mn1/ensembl-analysis,mn1/ensembl-analysis