First steps towards allowing more than one "track" by species: New method get_all_Slices(). This will implement/use a way to sort slices by species at some point. At the moment, the slice corresponding to the reference species is returned first and then the others in a random order. This is safe at the moment provided that we are dealing with two species only...
First steps towards allowing more than one "track" by species:
New method get_all_Slices(). This will implement/use a way to sort slices by species at some point. At the moment, the slice corresponding to the reference species is returned first and then the others in a random order. This is safe at the moment provided that we are dealing with two species only...

Old methods for mapping genes have been removed. They are implemented in the Bio::EnsEMBL::Compara::AlignSlice::Slice module.

Updated: get_SimpleAlign() method

danstaines/ensembl-compara,dbolser-ebi/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,ckongEbi/ensembl-compara,dbolser-ebi/ensembl-compara,ckongEbi/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara