Added JavaDoc for (some) publically callable methods.
Added JavaDoc for (some) publically callable methods.

thomasmaurel/ensj-healthcheck,Ensembl/ensj-healthcheck,thomasmaurel/ensj-healthcheck,thomasmaurel/ensj-healthcheck,Ensembl/ensj-healthcheck,thomasmaurel/ensj-healthcheck,Ensembl/ensj-healthcheck,Ensembl/ensj-healthcheck