Set the correct proto intermediate dir for native modules.
Set the correct proto intermediate dir for native modules.

Change-Id: I008778de2b81ed0c029979a7865827a96bf44b51

Hybrid-Power/startsync,ND-3500/platform_manifest,knone1/platform_manifest,hagar006/platform_manifest,RR-msm7x30/platform_manifest,xorware/android_build,xorware/android_build,xorware/android_build,see4ri/lolili,fallouttester/platform_manifest,pranav01/platform_manifest,xorware/android_build,xorware/android_build