Modification as a result of issue 11. The chain now stops once it has had 10 (definable as a constant in MarkovChain.java) errors. This is so that people don't fail to notice that the state was not restoring properly which seems to happen for certain datasets on certain x86 processors (or perhaps just Linux) when using the native library.
Modification as a result of issue 11. The chain now stops once it has had 10 (definable as a constant in MarkovChain.java) errors. This is so that people don't fail to notice that the state was not restoring properly which seems to happen for certain datasets on certain x86 processors (or perhaps just Linux) when using the native library.

git-svn-id: 67bc77c75b8364e4e9cdff0eb6560f5818674cd8@161 ca793f91-a31e-0410-b540-2769d408b6a1

svn2github/beast-mcmc,armanbilge/BEAST_sandbox,svn2github/beast-mcmc,armanbilge/BEAST_sandbox,svn2github/beast-mcmc,armanbilge/BEAST_sandbox,svn2github/beast-mcmc,armanbilge/BEAST_sandbox,armanbilge/BEAST_sandbox,svn2github/beast-mcmc