the beginnings of the DS alternative to PFitter.R, using DS for the inference and testing.  So far got the plausibility transform approach to getting the so-called CI working.  Next I want to add some real DS inference, eg PQRs for some range of times - like excluding that it's 0-14 days; but that's not required to mimic  PFitter. For that we need two more tests: one of Poisson fit (they use chi-squared for this, we will use the general univariate dsm, with some epsilon to the Poisson dsm), and the other is the starlike phylogeny convolution, which I have not taken the time to understand at this point.
the beginnings of the DS alternative to PFitter.R, using DS for the inference and testing.  So far got the plausibility transform approach to getting the so-called CI working.  Next I want to add some real DS inference, eg PQRs for some range of times - like excluding that it's 0-14 days; but that's not required to mimic  PFitter. For that we need two more tests: one of Poisson fit (they use chi-squared for this, we will use the general univariate dsm, with some epsilon to the Poisson dsm), and the other is the starlike phylogeny convolution, which I have not taken the time to understand at this point.

pedlefsen/hiv-founder-id,pedlefsen/hiv-founder-id,pedlefsen/hiv-founder-id