Overhaul pipeline: simplify and refactor code; fix a couple of minor bugs (incorrect source formatting in description; protein_ids with value '-'); add ability to control overwriting of gene names and descriptions (default is now to not overwrite existing data); removal of existing xrefs is now based on analysis rather than external_db - only xrefs added by this pipeline are deleted by default, the 'replace_all' functionality can be used to remove all matching external_dbs; switch to using rh-7 queue by default
Overhaul pipeline: simplify and refactor code; fix a couple of minor bugs (incorrect source formatting in description; protein_ids with value '-'); add ability to control overwriting of gene names and descriptions (default is now to not overwrite existing data); removal of existing xrefs is now based on analysis rather than external_db - only xrefs added by this pipeline are deleted by default, the 'replace_all' functionality can be used to remove all matching external_dbs; switch to using rh-7 queue by default

Ensembl/ensembl-production,Ensembl/ensembl-production,Ensembl/ensembl-production