added source_reads_ref to upload_reads()
added source_reads_ref to upload_reads()

psdehal/kb_trimmomatic,psdehal/kb_trimmomatic,psdehal/kb_trimmomatic,kbaseapps/kb_trimmomatic,kbaseapps/kb_trimmomatic,psdehal/kb_trimmomatic,kbaseapps/kb_trimmomatic,psdehal/kb_trimmomatic,kbaseapps/kb_trimmomatic,kbaseapps/kb_trimmomatic,kbaseapps/kb_trimmomatic