Restructured the interperatation of flags. Descovered that e value sorting is wrong. It assumes things like '1e-4' are strings instead of floats. This is not yet fixed (I am out of time right now). Added some error messages. It is now possible to output to stdout.
Restructured the interperatation of flags. Descovered that e value sorting is wrong. It assumes things like '1e-4' are strings instead of floats. This is not yet fixed (I am out of time right now). Added some error messages. It is now possible to output to stdout.

mattsoulanille/Protein-reciprocal-compare