added testing for existence of collated files to avoid overwriting. Giving affymetrix explicit chromosome names (+check), and added the random chromos to Fegenesh. Also moved the fgenesh missing stats to fgenesh-collate.sh, and
added testing for existence of collated files to avoid overwriting. Giving
affymetrix explicit chromosome names (+check), and added the random chromos
to Fegenesh. Also moved the fgenesh missing stats to fgenesh-collate.sh, and

james-monkeyshines/ensembl,at7/ensembl,muffato/ensembl,mjg17/ensembl,Ensembl/ensembl,mjg17/ensembl,mjg17/ensembl,danstaines/ensembl,james-monkeyshines/ensembl,willmclaren/ensembl,james-monkeyshines/ensembl,muffato/ensembl,at7/ensembl,james-monkeyshines/ensembl,muffato/ensembl,Ensembl/ensembl,danstaines/ensembl,Ensembl/ensembl,at7/ensembl,at7/ensembl,danstaines/ensembl,Ensembl/ensembl,muffato/ensembl,mjg17/ensembl,willmclaren/ensembl