NOVOplasty fix bugs and include new parameters (#3807)
NOVOplasty fix bugs and include new parameters (#3807)

* Include new tests

* fix XML

* Update tests

* Fix output option

* Add filter contig_tmp

* Update tests

* Update error variance option

* Fix test number outputs

* Update tests

* Add debug line

* Update tests

* Update tests

* Fix test 7

* Update tests

* Fix test 7

* Remove debug line

* Update tests 7

Co-authored-by: Björn Grüning <a31805f6001ab3b535ea95133fbc4db46e97e8d1@gruenings.eu>
gregvonkuster/tools-iuc,nekrut/tools-iuc,davebx/tools-iuc,jj-umn/tools-iuc,pjbriggs/tools-iuc,nekrut/tools-iuc,Delphine-L/tools-iuc,abretaud/tools-iuc,natefoo/tools-iuc,abretaud/tools-iuc,blankenberg/tools-iuc,mvdbeek/tools-iuc,galaxyproject/tools-iuc,ieguinoa/tools-iuc,jj-umn/tools-iuc,loraine-gueguen/tools-iuc,pjbriggs/tools-iuc,pavanvidem/tools-iuc,pjbriggs/tools-iuc,natefoo/tools-iuc,davebx/tools-iuc,natefoo/tools-iuc,pavanvidem/tools-iuc,natefoo/tools-iuc,nekrut/tools-iuc,davebx/tools-iuc,pavanvidem/tools-iuc,abretaud/tools-iuc,ieguinoa/tools-iuc,mvdbeek/tools-iuc,davebx/tools-iuc,ieguinoa/tools-iuc,natefoo/tools-iuc,blankenberg/tools-iuc,Delphine-L/tools-iuc,gregvonkuster/tools-iuc,loraine-gueguen/tools-iuc,ieguinoa/tools-iuc,jj-umn/tools-iuc,gregvonkuster/tools-iuc,mvdbeek/tools-iuc,mvdbeek/tools-iuc,Delphine-L/tools-iuc,davebx/tools-iuc,nekrut/tools-iuc,abretaud/tools-iuc,natefoo/tools-iuc,galaxyproject/tools-iuc,nsoranzo/tools-iuc,ieguinoa/tools-iuc,blankenberg/tools-iuc,nsoranzo/tools-iuc,gregvonkuster/tools-iuc,nekrut/tools-iuc,pavanvidem/tools-iuc,ieguinoa/tools-iuc,galaxyproject/tools-iuc,blankenberg/tools-iuc,mvdbeek/tools-iuc,loraine-gueguen/tools-iuc,Delphine-L/tools-iuc,mvdbeek/tools-iuc,abretaud/tools-iuc,jj-umn/tools-iuc,nsoranzo/tools-iuc,jj-umn/tools-iuc,gregvonkuster/tools-iuc,galaxyproject/tools-iuc,jj-umn/tools-iuc,Delphine-L/tools-iuc,blankenberg/tools-iuc,abretaud/tools-iuc,davebx/tools-iuc,jj-umn/tools-iuc,galaxyproject/tools-iuc,nekrut/tools-iuc,loraine-gueguen/tools-iuc,loraine-gueguen/tools-iuc,davebx/tools-iuc,ieguinoa/tools-iuc,nsoranzo/tools-iuc,natefoo/tools-iuc,loraine-gueguen/tools-iuc,abretaud/tools-iuc,mvdbeek/tools-iuc,pjbriggs/tools-iuc,nsoranzo/tools-iuc,pjbriggs/tools-iuc,Delphine-L/tools-iuc,blankenberg/tools-iuc,nsoranzo/tools-iuc,gregvonkuster/tools-iuc,gregvonkuster/tools-iuc,loraine-gueguen/tools-iuc,pavanvidem/tools-iuc,blankenberg/tools-iuc,nsoranzo/tools-iuc,Delphine-L/tools-iuc,galaxyproject/tools-iuc,pavanvidem/tools-iuc,pjbriggs/tools-iuc,galaxyproject/tools-iuc,nekrut/tools-iuc,pavanvidem/tools-iuc