Implemented --paired mode, which only discards a read pair if both pairs are above the coverage threshold
Implemented --paired mode, which only discards a read pair if both pairs are above the coverage threshold

kdmurray91/khmer,Winterflower/khmer,F1000Research/khmer,ged-lab/khmer,jas14/khmer,souravsingh/khmer,Winterflower/khmer,kdmurray91/khmer,kdmurray91/khmer,F1000Research/khmer,souravsingh/khmer,ged-lab/khmer,jas14/khmer,Winterflower/khmer,jas14/khmer,F1000Research/khmer,souravsingh/khmer,ged-lab/khmer