Updating documentation after recommendations from Will Spooner from CSHL Gramene. Increasing usage of $BASEDIR and using hcluster config file in the examples
Updating documentation after recommendations from Will Spooner from CSHL Gramene. Increasing usage of $BASEDIR and using hcluster config file in the examples

kumarsaurabh20/ensembl-compara,dbolser-ebi/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,dbolser-ebi/ensembl-compara,danstaines/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,danstaines/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara