

- integration of methods inherited by RunnableI
- deletefiles-methods added (removes the marginal result-files written by avid according to the passed options)
- watchout: by now no .mout or .psl files will be removed !!!
- $self->results method returns the name of the resulting alignment file

Ensembl/ensembl-pipeline,Ensembl/ensembl-pipeline,Ensembl/ensembl-pipeline