Added --termini_caps flag to shoveit.py.  Capping doesn't work yet though--default set to False
Added --termini_caps flag to shoveit.py.  Capping doesn't work yet though--default set to False

mrshirts/InterMol,mrshirts/InterMol,ctk3b/InterMol,shirtsgroup/InterMol,ctk3b/InterMol,shirtsgroup/InterMol