fix for variant order changes due to reannotation of VCF
fix for variant order changes due to reannotation of VCF

bw2/gemini,arq5x/gemini,udp3f/gemini,arq5x/gemini,bgruening/gemini,arq5x/gemini,xuzetan/gemini,udp3f/gemini,bw2/gemini,heuermh/gemini,xuzetan/gemini,heuermh/gemini,bpow/gemini,brentp/gemini,arq5x/gemini,brentp/gemini,heuermh/gemini,bgruening/gemini,brentp/gemini,xuzetan/gemini,bw2/gemini,heuermh/gemini,bpow/gemini,udp3f/gemini,bpow/gemini,udp3f/gemini,bpow/gemini,xuzetan/gemini,bw2/gemini,bgruening/gemini,bgruening/gemini,brentp/gemini