modified get_SimpleAlign to have variable parameters:   -cdna => 1 : use cDNA rather than protein sequence   -uniq_seq => : only include distinct protein sequences in MA   -ID_TYPE => 'STABLE' or 'SEQ' or 'MEMBER' : the ID used in the SimpleAlign         default is the stable_id, but the sequence_id or member_id allows 	for production processes to have a tighter coupling when parsing 	output generated by external programs.
modified get_SimpleAlign to have variable parameters:
  -cdna => 1 : use cDNA rather than protein sequence
  -uniq_seq => : only include distinct protein sequences in MA
  -ID_TYPE => 'STABLE' or 'SEQ' or 'MEMBER' : the ID used in the SimpleAlign
        default is the stable_id, but the sequence_id or member_id allows
	for production processes to have a tighter coupling when parsing
	output generated by external programs.

dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara,dbolser-ebi/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara