Added various fixes to deal with new genome name style. Added method_link_type and species_set_name.
Added various fixes to deal with new genome name style. Added method_link_type and species_set_name.

etapanari/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,etapanari/ensembl-compara,ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara