initial check in: Analysis module which will 'flatten' a tree into Ortholgue/Paralogue pair relationships.  Requires a rooted tree with ancestral duplication events tagged within the tree. - current state: rough algorithm framework is in place but need to fill in more details to complete it.  Algorithm is based on looking at each pair in the tree, walk all the ancestral nodes which connect them, and classify based on 'predicted historical' speciation/duplication events.
initial check in: Analysis module which will 'flatten' a tree into
Ortholgue/Paralogue pair relationships.  Requires a rooted tree with
ancestral duplication events tagged within the tree.
- current state: rough algorithm framework is in place but need to fill in
more details to complete it.  Algorithm is based on looking at each pair
in the tree, walk all the ancestral nodes which connect them, and classify
based on 'predicted historical' speciation/duplication events.

Ensembl/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,dbolser-ebi/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,danstaines/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,ckongEbi/ensembl-compara,etapanari/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara