got clone2flat to work with new vc based stuff
got clone2flat to work with new vc based stuff

muffato/ensembl,willmclaren/ensembl,mjg17/ensembl,muffato/ensembl,Ensembl/ensembl,danstaines/ensembl,Ensembl/ensembl,james-monkeyshines/ensembl,Ensembl/ensembl,muffato/ensembl,at7/ensembl,mjg17/ensembl,danstaines/ensembl,mjg17/ensembl,at7/ensembl,mjg17/ensembl,james-monkeyshines/ensembl,at7/ensembl,Ensembl/ensembl,at7/ensembl,james-monkeyshines/ensembl,james-monkeyshines/ensembl,willmclaren/ensembl,danstaines/ensembl,muffato/ensembl