Making this script new alt allele compatible
Making this script new alt allele compatible

muffato/ensembl,Ensembl/ensembl,Ensembl/ensembl,mjg17/ensembl,danstaines/ensembl,mjg17/ensembl,danstaines/ensembl,at7/ensembl,muffato/ensembl,mjg17/ensembl,at7/ensembl,james-monkeyshines/ensembl,mjg17/ensembl,danstaines/ensembl,at7/ensembl,muffato/ensembl,james-monkeyshines/ensembl,Ensembl/ensembl,at7/ensembl,Ensembl/ensembl,james-monkeyshines/ensembl,willmclaren/ensembl,james-monkeyshines/ensembl,willmclaren/ensembl,muffato/ensembl