Changed fastq parser for CASAVA >1.8 so newest versions of bwa won't throw an error complaining about header name mismatches between read pairs
Changed fastq parser for CASAVA >1.8 so newest versions of bwa won't throw an error complaining about header name mismatches between read pairs

loeblab/Duplex-Sequencing,loeblab/Duplex-Sequencing,loeblab/Duplex-Sequencing