[MRH] Updated TemplateReactionGenerator.java
[MRH] Updated TemplateReactionGenerator.java

Seyed was running RMG, supplying a Seed Mechanism with ~230 species.  While reacting all of the initial core species (before trying to enlarge the mechanism), RMG/java crashed, stating the maximum heap size had been reached.

To help combat this problem, MRH (after discussion with JWA and RW) decided to add additional garbage collection.

When a template w/two reactants is encountered, RMG grabs a species and then reacts it against every other species in the core.  After this step, MRH added garbage collection.  Thus, for every two reactant rxn family template, RMG will perform N number of garbage collections, where N is the number of initial core species (equal to the number of species in the condition file + number of species in seed mechanism).

connie/RMG-Java,connie/RMG-Java,keceli/RMG-Java,enochd/RMG-Java,KEHANG/RMG-Java,nyee/RMG-Java,enochd/RMG-Java,nyee/RMG-Java,faribas/RMG-Java,rwest/RMG-Java,jwallen/RMG-Java,KEHANG/RMG-Java,enochd/RMG-Java,faribas/RMG-Java,KEHANG/RMG-Java,nyee/RMG-Java,nyee/RMG-Java,jwallen/RMG-Java,enochd/RMG-Java,ReactionMechanismGenerator/RMG-Java,connie/RMG-Java,enochd/RMG-Java,ReactionMechanismGenerator/RMG-Java,KEHANG/RMG-Java,ReactionMechanismGenerator/RMG-Java,rwest/RMG-Java,keceli/RMG-Java,nyee/RMG-Java,jwallen/RMG-Java,connie/RMG-Java,jwallen/RMG-Java,enochd/RMG-Java,KEHANG/RMG-Java,KEHANG/RMG-Java,faribas/RMG-Java,keceli/RMG-Java,jwallen/RMG-Java,jwallen/RMG-Java,rwest/RMG-Java,rwest/RMG-Java,keceli/RMG-Java,nyee/RMG-Java,keceli/RMG-Java,ReactionMechanismGenerator/RMG-Java,faribas/RMG-Java,rwest/RMG-Java,keceli/RMG-Java,ReactionMechanismGenerator/RMG-Java,connie/RMG-Java