In the copy_dna_dna_alignments method:  - use mysqldump | mysql instead of a temp file.  - indexes are rebuilt after copying all the data
In the copy_dna_dna_alignments method:
 - use mysqldump | mysql instead of a temp file.
 - indexes are rebuilt after copying all the data

ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,etapanari/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,danstaines/ensembl-compara,kumarsaurabh20/ensembl-compara,dbolser-ebi/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara