Clarify which functions use the user flags and which don't.
Clarify which functions use the user flags and which don't.


git-svn-id: 31d9d2f6432a47c86a3640814024c107794ea77c@2854 0785d39b-7218-0410-832d-ea1e28bc413d

johntfoster/dealii,mtezzele/dealii,spco/dealii,ibkim11/dealii,ibkim11/dealii,sriharisundar/dealii,ESeNonFossiIo/dealii,adamkosik/dealii,YongYang86/dealii,ibkim11/dealii,shakirbsm/dealii,johntfoster/dealii,YongYang86/dealii,maieneuro/dealii,Arezou-gh/dealii,rrgrove6/dealii,ESeNonFossiIo/dealii,mac-a/dealii,msteigemann/dealii,EGP-CIG-REU/dealii,spco/dealii,sairajat/dealii,natashasharma/dealii,danshapero/dealii,angelrca/dealii,lue/dealii,EGP-CIG-REU/dealii,Arezou-gh/dealii,YongYang86/dealii,shakirbsm/dealii,nicolacavallini/dealii,angelrca/dealii,angelrca/dealii,mac-a/dealii,andreamola/dealii,pesser/dealii,natashasharma/dealii,kalj/dealii,danshapero/dealii,johntfoster/dealii,mtezzele/dealii,pesser/dealii,mtezzele/dealii,johntfoster/dealii,rrgrove6/dealii,johntfoster/dealii,maieneuro/dealii,danshapero/dealii,mac-a/dealii,EGP-CIG-REU/dealii,pesser/dealii,flow123d/dealii,angelrca/dealii,ESeNonFossiIo/dealii,angelrca/dealii,shakirbsm/dealii,spco/dealii,nicolacavallini/dealii,jperryhouts/dealii,danshapero/dealii,naliboff/dealii,adamkosik/dealii,maieneuro/dealii,jperryhouts/dealii,naliboff/dealii,natashasharma/dealii,sairajat/dealii,rrgrove6/dealii,naliboff/dealii,flow123d/dealii,lpolster/dealii,JaeryunYim/dealii,gpitton/dealii,lpolster/dealii,YongYang86/dealii,flow123d/dealii,msteigemann/dealii,gpitton/dealii,andreamola/dealii,danshapero/dealii,adamkosik/dealii,sriharisundar/dealii,nicolacavallini/dealii,EGP-CIG-REU/dealii,JaeryunYim/dealii,rrgrove6/dealii,sriharisundar/dealii,ibkim11/dealii,sairajat/dealii,YongYang86/dealii,adamkosik/dealii,kalj/dealii,mtezzele/dealii,jperryhouts/dealii,gpitton/dealii,EGP-CIG-REU/dealii,spco/dealii,jperryhouts/dealii,shakirbsm/dealii,YongYang86/dealii,lue/dealii,mac-a/dealii,gpitton/dealii,flow123d/dealii,sairajat/dealii,johntfoster/dealii,rrgrove6/dealii,lue/dealii,naliboff/dealii,sriharisundar/dealii,shakirbsm/dealii,msteigemann/dealii,jperryhouts/dealii,lue/dealii,ESeNonFossiIo/dealii,Arezou-gh/dealii,pesser/dealii,lpolster/dealii,danshapero/dealii,kalj/dealii,naliboff/dealii,mac-a/dealii,Arezou-gh/dealii,maieneuro/dealii,sairajat/dealii,JaeryunYim/dealii,rrgrove6/dealii,pesser/dealii,shakirbsm/dealii,kalj/dealii,lue/dealii,jperryhouts/dealii,flow123d/dealii,lue/dealii,andreamola/dealii,sairajat/dealii,spco/dealii,lpolster/dealii,JaeryunYim/dealii,mtezzele/dealii,spco/dealii,msteigemann/dealii,ESeNonFossiIo/dealii,Arezou-gh/dealii,sairajat/dealii,shakirbsm/dealii,naliboff/dealii,Arezou-gh/dealii,gpitton/dealii,adamkosik/dealii,nicolacavallini/dealii,EGP-CIG-REU/dealii,Arezou-gh/dealii,natashasharma/dealii,andreamola/dealii,lpolster/dealii,maieneuro/dealii,gpitton/dealii,ibkim11/dealii,lpolster/dealii,kalj/dealii,sriharisundar/dealii,johntfoster/dealii,flow123d/dealii,danshapero/dealii,pesser/dealii,lpolster/dealii,ibkim11/dealii,jperryhouts/dealii,spco/dealii,natashasharma/dealii,lue/dealii,angelrca/dealii,gpitton/dealii,nicolacavallini/dealii,msteigemann/dealii,andreamola/dealii,angelrca/dealii,ESeNonFossiIo/dealii,kalj/dealii,mac-a/dealii,adamkosik/dealii,mac-a/dealii,flow123d/dealii,rrgrove6/dealii,mtezzele/dealii,maieneuro/dealii,YongYang86/dealii,sriharisundar/dealii,naliboff/dealii,kalj/dealii,maieneuro/dealii,sriharisundar/dealii,ibkim11/dealii,adamkosik/dealii,JaeryunYim/dealii,nicolacavallini/dealii,msteigemann/dealii,natashasharma/dealii,andreamola/dealii,mtezzele/dealii,natashasharma/dealii,andreamola/dealii,ESeNonFossiIo/dealii,pesser/dealii,EGP-CIG-REU/dealii,JaeryunYim/dealii,JaeryunYim/dealii,nicolacavallini/dealii,msteigemann/dealii