Fixup the paths when using global paths
Fixup the paths when using global paths

GMOD/jbrowse,nathandunn/jbrowse,GMOD/jbrowse,GMOD/jbrowse,nathandunn/jbrowse,nathandunn/jbrowse,nathandunn/jbrowse,GMOD/jbrowse,nathandunn/jbrowse,GMOD/jbrowse