Mykrobe (#13781)
Mykrobe (#13781)

* update mykrobe to v0.6.1

remove source fn

add wget to build requirements

add zlib to build requirements

move zlib to host requirements

specify zlib location

specify zlib location

move zlib to build requirements

add c compiler

add some more zlib related flags

add some more zlib related flags

add htslib to reqs

add setuptools to reqs

remove htslib to reqs

try pip install instead

try skipping py2

skip py27 and add imports test

see if py27 works now

remove py27 build

create test script

create test script

add tests dir to test reqs

add data dir to test reqs

* Update meta.yaml

* add wget to host

* clean up build script. add test source files

* add post-link script for downloading panel data

* add prefix location specifier for mykrobe data dir

* fix post-link script

* switch to shasum for data download check. add wget to run reqs

* use pip install

* Delete build.sh

* not sure why this has not failed before

* Update meta.yaml

* fix mccortex install

* use default compiler for cxx

* compile with -fPIC

* remove hard-coded gcc in htslib Makefile. remove unncessary reqs

* bump build number to use new mongoengine recipe

ostrokach/bioconda-recipes,mdehollander/bioconda-recipes,mdehollander/bioconda-recipes,rob-p/bioconda-recipes,zachcp/bioconda-recipes,bebatut/bioconda-recipes,Luobiny/bioconda-recipes,gregvonkuster/bioconda-recipes,bioconda/bioconda-recipes,mdehollander/bioconda-recipes,chapmanb/bioconda-recipes,jfallmann/bioconda-recipes,bebatut/bioconda-recipes,saketkc/bioconda-recipes,rvalieris/bioconda-recipes,ivirshup/bioconda-recipes,joachimwolff/bioconda-recipes,acaprez/recipes,peterjc/bioconda-recipes,joachimwolff/bioconda-recipes,mdehollander/bioconda-recipes,blankenberg/bioconda-recipes,rvalieris/bioconda-recipes,jfallmann/bioconda-recipes,peterjc/bioconda-recipes,jfallmann/bioconda-recipes,peterjc/bioconda-recipes,phac-nml/bioconda-recipes,blankenberg/bioconda-recipes,ivirshup/bioconda-recipes,ivirshup/bioconda-recipes,zachcp/bioconda-recipes,Luobiny/bioconda-recipes,roryk/recipes,rvalieris/bioconda-recipes,saketkc/bioconda-recipes,cokelaer/bioconda-recipes,acaprez/recipes,shenwei356/bioconda-recipes,Luobiny/bioconda-recipes,ivirshup/bioconda-recipes,gregvonkuster/bioconda-recipes,Luobiny/bioconda-recipes,jfallmann/bioconda-recipes,joachimwolff/bioconda-recipes,joachimwolff/bioconda-recipes,blankenberg/bioconda-recipes,ostrokach/bioconda-recipes,ivirshup/bioconda-recipes,bioconda/bioconda-recipes,shenwei356/bioconda-recipes,gregvonkuster/bioconda-recipes,gregvonkuster/bioconda-recipes,bioconda/bioconda-recipes,zachcp/bioconda-recipes,npavlovikj/bioconda-recipes,ostrokach/bioconda-recipes,ostrokach/bioconda-recipes,mdehollander/bioconda-recipes,roryk/recipes,ostrokach/bioconda-recipes,shenwei356/bioconda-recipes,mdehollander/bioconda-recipes,npavlovikj/bioconda-recipes,peterjc/bioconda-recipes,rob-p/bioconda-recipes,npavlovikj/bioconda-recipes,joachimwolff/bioconda-recipes,phac-nml/bioconda-recipes,saketkc/bioconda-recipes,acaprez/recipes,saketkc/bioconda-recipes,chapmanb/bioconda-recipes,chapmanb/bioconda-recipes,phac-nml/bioconda-recipes,peterjc/bioconda-recipes,bebatut/bioconda-recipes,chapmanb/bioconda-recipes,rvalieris/bioconda-recipes,rob-p/bioconda-recipes,saketkc/bioconda-recipes,peterjc/bioconda-recipes,cokelaer/bioconda-recipes,rvalieris/bioconda-recipes,rvalieris/bioconda-recipes,shenwei356/bioconda-recipes,ivirshup/bioconda-recipes,zachcp/bioconda-recipes,joachimwolff/bioconda-recipes,saketkc/bioconda-recipes,cokelaer/bioconda-recipes,roryk/recipes,phac-nml/bioconda-recipes,bebatut/bioconda-recipes,phac-nml/bioconda-recipes,blankenberg/bioconda-recipes,bioconda/bioconda-recipes,npavlovikj/bioconda-recipes,acaprez/recipes,chapmanb/bioconda-recipes,ostrokach/bioconda-recipes,cokelaer/bioconda-recipes,rob-p/bioconda-recipes