updated command-line options
updated command-line options

ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/AutomatedRepairBenchmarks.c,squaresLab/RepairBox