added assumeConnectedBackbone arg to calculateBondsBetween
added assumeConnectedBackbone arg to calculateBondsBetween

arose/ngl,arose/ngl,fredludlow/ngl,j0kaso/ngl,fredludlow/ngl,j0kaso/ngl,arose/ngl,j0kaso/ngl,arose/ngl,fredludlow/ngl,fredludlow/ngl