Big clearup of too many commented lines. Made use of branch 3 from PAFCluster/BreakPAFCluster in dataflow rules. Set NJTREE parameters in analysis_data table. Added control rule on PAFCluster from UpdatePAFIds. Still some work to do on homology_dNdS analysis storing so that it updates the parameter column properly.
Big clearup of too many commented lines. Made use of branch 3 from PAFCluster/BreakPAFCluster in dataflow rules. Set NJTREE parameters in analysis_data table. Added control rule on PAFCluster from UpdatePAFIds. Still some work to do on homology_dNdS analysis storing so that it updates the parameter column properly.

Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,dbolser-ebi/ensembl-compara,ckongEbi/ensembl-compara,etapanari/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara,dbolser-ebi/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara