added more docs to apply_patch
added more docs to apply_patch

ChrisTimperley/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,squaresLab/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/AutomatedRepairBenchmarks.c,ChrisTimperley/RepairBox,ChrisTimperley/RepairBox