updated output message, added option to blastz '--ambiguous=iupac'
updated output message, added option to blastz '--ambiguous=iupac'

LyonsLab/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge