simulatedannealing.py is the core Simulated Annealing algorithm and it is instantiated through sabpn.py. It anneals for the steps entered by the user through the command line. There is currently a bug where a large majority of the new transition states are the same as the current state. Therefore, delta e is typically 0. To accomodate for this bug, the current implementation bases the likelihood to accept a worse state solely on the temperature.
simulatedannealing.py is the core Simulated Annealing algorithm and it is instantiated through sabpn.py. It anneals for the steps entered by the user through the command line. There is currently a bug where a large majority of the new transition states are the same as the current state. Therefore, delta e is typically 0. To accomodate for this bug, the current implementation bases the likelihood to accept a worse state solely on the temperature.

git-svn-id: 6391b798f55e3e4f5184bc6d113ebedc82009d5e@3735 1fbec0df-f6b4-4bca-857c-de90862b47bd

gotgenes/BiologicalProcessNetworks