Added doxygen generated html documentation to the ignored files.
Added doxygen generated html documentation to the ignored files.

copasi/COPASI,copasi/COPASI,copasi/COPASI,copasi/COPASI,jonasfoe/COPASI,copasi/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,copasi/COPASI,copasi/COPASI,jonasfoe/COPASI,copasi/COPASI,copasi/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,jonasfoe/COPASI