RnaChipIntegrator.py: in AnalyseNearestPeaksToTranscripts function, only reject unflagged transcripts if input RNA-seq data is flagged - otherwise include all transcripts.
RnaChipIntegrator.py: in AnalyseNearestPeaksToTranscripts function, only reject unflagged transcripts if input RNA-seq data is flagged - otherwise include all transcripts.

fls-bioinformatics-core/RnaChipIntegrator