added option to sub genomes so that only genome ids are returned
added option to sub genomes so that only genome ids are returned

LyonsLab/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge