readded kmer analysis code, fixed to handle fastq
readded kmer analysis code, fixed to handle fastq

mitenjain/nanopore,mitenjain/nanopore,mitenjain/nanopore,mitenjain/nanopore,mitenjain/nanopore,benedictpaten/marginAlign,isovic/marginAlign,mitenjain/nanopore,benedictpaten/marginAlign,benedictpaten/marginAlign,mitenjain/nanopore,isovic/marginAlign,mitenjain/nanopore