Now uses the theoretically correct relationship between SNP FP and TP ratios for Illumina data.  maxQ score for a snp is now 60
Now uses the theoretically correct relationship between SNP FP and TP ratios for Illumina data.  maxQ score for a snp is now 60

git-svn-id: 4561c0a8f080806b19201efb9525134c00b76d40@2168 348d0f76-0448-11de-a6fe-93d51630548a

iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable