cd context is lost between run commands
cd context is lost between run commands

ewels/NGI-RNAseq,Hammarn/NGI-RNAseq,ewels/NGI-RNAseq,ewels/NGI-RNAseq,SciLifeLab/NGI-RNAseq,SciLifeLab/NGI-RNAseq,Galithil/NGI-RNAseq,Hammarn/NGI-RNAseq,SciLifeLab/NGI-RNAseq,Hammarn/NGI-RNAseq,Hammarn/NGI-RNAseq,Galithil/NGI-RNAseq,ewels/NGI-RNAseq,SciLifeLab/NGI-RNAseq,Galithil/NGI-RNAseq,SciLifeLab/NGI-RNAseq,ewels/NGI-RNAseq,Galithil/NGI-RNAseq,Hammarn/NGI-RNAseq