bamtofastq discards hard-clipped reads. Important for when the BAM does not have secondary alignments flagged (bwa mem -m parameter)
bamtofastq discards hard-clipped reads. Important for when the BAM does not have secondary alignments flagged (bwa mem -m parameter)

PiaEP/speedseq,PiaEP/speedseq,s-boardman/speedseq,hall-lab/speedseq,s-boardman/speedseq,pombredanne/speedseq,pfxuan/speedseq,pfxuan/speedseq,hall-lab/speedseq,s-boardman/speedseq,pombredanne/speedseq,pfxuan/speedseq,pombredanne/speedseq,hall-lab/speedseq,PiaEP/speedseq,s-boardman/speedseq,pfxuan/speedseq,pombredanne/speedseq,pfxuan/speedseq,s-boardman/speedseq,pfxuan/speedseq,PiaEP/speedseq,hall-lab/speedseq,pombredanne/speedseq,hall-lab/speedseq,pombredanne/speedseq,PiaEP/speedseq,PiaEP/speedseq,s-boardman/speedseq,hall-lab/speedseq