Fix beekeeper command + restart species after finishing aborted run
Fix beekeeper command + restart species after finishing aborted run

- Fix: beekeeper command was taken from beekeeper -sync which has no
  -registry. Now taken from -run.
- After having finished a previously aborted pipeline, the script
  restarted the last track session, even if it was the same work that
was just completed. This commit forces all the species commands to be
recalculated, which means that the completed work will not be rerun.

MatBarba/vb-rnaseqdb,MatBarba/vb-rnaseqdb