replaced program names with options that use path if possible
replaced program names with options that use path if possible

molbiodiv/meta-barcoding-dual-indexing,molbiodiv/meta-barcoding-dual-indexing,iimog/meta-barcoding-dual-indexing,molbiodiv/meta-barcoding-dual-indexing,iimog/meta-barcoding-dual-indexing,iimog/meta-barcoding-dual-indexing