Doesn't crash if log file and tree rates do not match. Matches them and performs the analysis with the warning message.  
Doesn't crash if log file and tree rates do not match. Matches them and performs the analysis with the warning message.  


JifengJiang/beast-mcmc,JifengJiang/beast-mcmc,JifengJiang/beast-mcmc,JifengJiang/beast-mcmc,JifengJiang/beast-mcmc