Do not copy non-primary alignments into reverted SAM.
Do not copy non-primary alignments into reverted SAM.

nh13/picard,broadinstitute/picard,annkupi/picard,broadinstitute/picard,alecw/picard,alecw/picard,annkupi/picard,annkupi/picard,nh13/picard,broadinstitute/picard,annkupi/picard,nh13/picard,broadinstitute/picard,alecw/picard,broadinstitute/picard,nh13/picard,alecw/picard