add reffile to mcflirt
add reffile to mcflirt

git-svn-id: 24f545668198cdd163a527378499f2123e59bf9f@590 ead46cd0-7350-4e37-8683-fc4c6f79bf00

mick-d/nipype,satra/NiPypeold,wanderine/nipype,fprados/nipype,mick-d/nipype,gerddie/nipype,pearsonlab/nipype,christianbrodbeck/nipype,FredLoney/nipype,wanderine/nipype,carlohamalainen/nipype,satra/NiPypeold,glatard/nipype,pearsonlab/nipype,glatard/nipype,fprados/nipype,gerddie/nipype,arokem/nipype,dgellis90/nipype,Leoniela/nipype,fprados/nipype,sgiavasis/nipype,carlohamalainen/nipype,blakedewey/nipype,blakedewey/nipype,iglpdc/nipype,mick-d/nipype_source,carolFrohlich/nipype,arokem/nipype,glatard/nipype,rameshvs/nipype,JohnGriffiths/nipype,carlohamalainen/nipype,mick-d/nipype,christianbrodbeck/nipype,grlee77/nipype,wanderine/nipype,mick-d/nipype_source,iglpdc/nipype,FCP-INDI/nipype,sgiavasis/nipype,FCP-INDI/nipype,sgiavasis/nipype,rameshvs/nipype,glatard/nipype,dmordom/nipype,FCP-INDI/nipype,Leoniela/nipype,Leoniela/nipype,rameshvs/nipype,pearsonlab/nipype,rameshvs/nipype,blakedewey/nipype,gerddie/nipype,gerddie/nipype,wanderine/nipype,dgellis90/nipype,FCP-INDI/nipype,FredLoney/nipype,carolFrohlich/nipype,dmordom/nipype,FredLoney/nipype,dgellis90/nipype,JohnGriffiths/nipype,grlee77/nipype,arokem/nipype,grlee77/nipype,iglpdc/nipype,carolFrohlich/nipype,dgellis90/nipype,JohnGriffiths/nipype,mick-d/nipype_source,iglpdc/nipype,mick-d/nipype,sgiavasis/nipype,arokem/nipype,grlee77/nipype,carolFrohlich/nipype,JohnGriffiths/nipype,pearsonlab/nipype,blakedewey/nipype,dmordom/nipype