new example for how to run a structure alignment
new example for how to run a structure alignment

git-svn-id: a754228c0d23e99fefe44e35d84d6184990ceaa2@7554 7c6358e6-4a41-0410-a743-a5b2a554c398

andreasprlic/biojava,sbliven/biojava-sbliven,sbliven/biojava-sbliven,paolopavan/biojava,JolantaWojcik/biojavaOwn,paolopavan/biojava,JolantaWojcik/biojavaOwn,lafita/biojava,sbliven/biojava-sbliven,pwrose/biojava,pwrose/biojava,fionakim/biojava,paolopavan/biojava,heuermh/biojava,pwrose/biojava,biojava/biojava,emckee2006/biojava,lafita/biojava,fionakim/biojava,zachcp/biojava,biojava/biojava,andreasprlic/biojava,heuermh/biojava,lafita/biojava,fionakim/biojava,emckee2006/biojava,andreasprlic/biojava,zachcp/biojava,heuermh/biojava,zachcp/biojava,emckee2006/biojava,biojava/biojava,andreasprlic/biojava