Pass in scratch directory as option
Pass in scratch directory as option

I use this to persist a nipype working directory across docker runs

Maybe it should also pass '-w scratch' to the contained fmriprep?

oesteban/fmriprep,oesteban/fmriprep,oesteban/preprocessing-workflow,oesteban/fmriprep,poldracklab/preprocessing-workflow,poldracklab/fmriprep,poldracklab/fmriprep,oesteban/preprocessing-workflow,poldracklab/fmriprep,poldracklab/preprocessing-workflow