changed pre-processing of bams, included for loop inside the function instead, it seems more natural to have it there
changed pre-processing of bams, included for loop inside the function instead, it seems more natural to have it there

MonashBioinformaticsPlatform/RNAsik-pipe,MonashBioinformaticsPlatform/RNAsik-pipe,MonashBioinformaticsPlatform/RNAsik-pipe