implemented getAlignmentRegion body - all tests passing
implemented getAlignmentRegion body - all tests passing

BioInf-Wuerzburg/AliTV,AliTVTeam/AliTV,AliTVTeam/AliTV,BioInf-Wuerzburg/AliTV,BioInf-Wuerzburg/AliTV,BioInf-Wuerzburg/AliTV,BioInf-Wuerzburg/AliTV,BioInf-Wuerzburg/AliTV