rearrange to test run_pipeline() for multiply mapped reads
rearrange to test run_pipeline() for multiply mapped reads

about to pull off the two run_pipeline() commands for
unmapped and multiply_mapped to separate .py files
so I can run them simultaneously.

JanetMatsen/meta4_bins_janalysis,JanetMatsen/meta4_bins_janalysis,JanetMatsen/meta4_bins_janalysis