Added debug output for a detected crash. Turns out that marginAlign passes CIGAR strings as separated ops all together via *command line* to another tool. This causes crashes when read lengths are very long (concretely had a case of read > 94000bp).
Added debug output for a detected crash. Turns out that marginAlign passes CIGAR strings as separated ops all together via *command line* to another tool. This causes crashes when read lengths are very long (concretely had a case of read > 94000bp).

isovic/marginAlign,isovic/marginAlign