Fragment generation. We now store a mapping from each PDB chain's cropped sequence to the original numbering. This will be used in post-processing to renumber fragments without the need of a fudge factor. Importantly, we can now use the loops files without mmodification as well.
Fragment generation.
We now store a mapping from each PDB chain's cropped sequence to the original numbering. This will be used in post-processing to renumber fragments without the need of a fudge factor. Importantly, we can now use the loops files without mmodification as well.

Kortemme-Lab/klab,Kortemme-Lab/klab,Kortemme-Lab/klab,Kortemme-Lab/klab