Added start of rseqc step.
Added start of rseqc step.

SciLifeLab/NGI-RNAseq,Hammarn/NGI-RNAseq,Galithil/NGI-RNAseq,Hammarn/NGI-RNAseq,Galithil/NGI-RNAseq,ewels/NGI-RNAseq,SciLifeLab/NGI-RNAseq,Hammarn/NGI-RNAseq,ewels/NGI-RNAseq,ewels/NGI-RNAseq,Galithil/NGI-RNAseq,SciLifeLab/NGI-RNAseq,ewels/NGI-RNAseq,Hammarn/NGI-RNAseq,Galithil/NGI-RNAseq,SciLifeLab/NGI-RNAseq,ewels/NGI-MethylSeq,ewels/NGI-MethylSeq,ewels/NGI-MethylSeq,SciLifeLab/NGI-RNAseq,Hammarn/NGI-RNAseq,ewels/NGI-RNAseq