Slightly altered the way calculate and set new phases works to allow for differences in strictness of translation between genscan and ensembl and to check that pepetides actually translate before adding them to output
Slightly altered the way calculate and set new phases works to allow for differences in strictness of translation between genscan and ensembl and to check that pepetides actually translate before adding them to output

Ensembl/ensembl-pipeline,Ensembl/ensembl-pipeline,Ensembl/ensembl-pipeline