added a command line parser to misc. there is also a wiki page in trac, which explaines the usage etc.
added a command line parser to misc. there is also a wiki page in trac, which explaines the usage etc.

git-svn-id: a7f2a8f7432d210e972fb03898013d213e2b549b@2183 e6417c60-b987-48fd-844e-b20f0fcc1017

gkno/seqan,gkno/seqan,gkno/seqan,gkno/seqan,gkno/seqan,gkno/seqan,gkno/seqan