Changed check for the "assembled" option in the Job database to check for the existence of the $raw_dir/$job_num.abundance file because the recompute cluster can't see the Job database.
Changed check for the "assembled" option in the Job database to check for the existence of the $raw_dir/$job_num.abundance file because the recompute cluster can't see the Job database.

teharrison/pipeline,wgerlach/pipeline,wgerlach/pipeline,MG-RAST/pipeline,teharrison/pipeline,MG-RAST/pipeline,teharrison/pipeline,MG-RAST/pipeline,wgerlach/pipeline