Allow the option for pair end collection to either merge all paired sets together (original and only behavior) and to run each list paired set as individuals samples
Allow the option for pair end collection to either merge all paired sets together (original and only behavior) and to run each list paired set as individuals samples

mvdbeek/tools-iuc,gregvonkuster/tools-iuc,bimbam23/tools-iuc,ieguinoa/tools-iuc,davebx/tools-iuc,nekrut/tools-iuc,mblue9/tools-iuc,mblue9/tools-iuc,ieguinoa/tools-iuc,pjbriggs/tools-iuc,mvdbeek/tools-iuc,davebx/tools-iuc,jj-umn/tools-iuc,loraine-gueguen/tools-iuc,blankenberg/tools-iuc,Delphine-L/tools-iuc,pjbriggs/tools-iuc,lparsons/tools-iuc,gregvonkuster/tools-iuc,mblue9/tools-iuc,galaxyproject/tools-iuc,galaxyproject/tools-iuc,Delphine-L/tools-iuc,abretaud/tools-iuc,nekrut/tools-iuc,jj-umn/tools-iuc,blankenberg/tools-iuc,abretaud/tools-iuc,davebx/tools-iuc,abretaud/tools-iuc,nsoranzo/tools-iuc,dpryan79/tools-iuc,abretaud/tools-iuc,nekrut/tools-iuc,Delphine-L/tools-iuc,dpryan79/tools-iuc,dpryan79/tools-iuc,lparsons/tools-iuc,pjbriggs/tools-iuc,dpryan79/tools-iuc,mvdbeek/tools-iuc,nsoranzo/tools-iuc,galaxyproject/tools-iuc,gregvonkuster/tools-iuc,nekrut/tools-iuc,lparsons/tools-iuc,pavanvidem/tools-iuc,jj-umn/tools-iuc,pavanvidem/tools-iuc,pjbriggs/tools-iuc,mvdbeek/tools-iuc,gregvonkuster/tools-iuc,bimbam23/tools-iuc,natefoo/tools-iuc,pjbriggs/tools-iuc,jj-umn/tools-iuc,nsoranzo/tools-iuc,nsoranzo/tools-iuc,ieguinoa/tools-iuc,ieguinoa/tools-iuc,natefoo/tools-iuc,gvlproject/tools-iuc,nekrut/tools-iuc,davebx/tools-iuc,galaxyproject/tools-iuc,loraine-gueguen/tools-iuc,nsoranzo/tools-iuc,ieguinoa/tools-iuc,gregvonkuster/tools-iuc,mvdbeek/tools-iuc,jj-umn/tools-iuc,galaxyproject/tools-iuc,natefoo/tools-iuc,gregvonkuster/tools-iuc,dpryan79/tools-iuc,mvdbeek/tools-iuc,abretaud/tools-iuc,davebx/tools-iuc,ieguinoa/tools-iuc,davebx/tools-iuc,mblue9/tools-iuc,galaxyproject/tools-iuc,mvdbeek/tools-iuc,blankenberg/tools-iuc,pjbriggs/tools-iuc,nekrut/tools-iuc,gvlproject/tools-iuc,natefoo/tools-iuc,Delphine-L/tools-iuc,galaxyproject/tools-iuc,davebx/tools-iuc,blankenberg/tools-iuc,mblue9/tools-iuc,blankenberg/tools-iuc,nsoranzo/tools-iuc,bimbam23/tools-iuc,bimbam23/tools-iuc,blankenberg/tools-iuc,lparsons/tools-iuc,lparsons/tools-iuc,martenson/tools-iuc,jj-umn/tools-iuc,ieguinoa/tools-iuc,pavanvidem/tools-iuc,lparsons/tools-iuc,gvlproject/tools-iuc,Delphine-L/tools-iuc,gvlproject/tools-iuc,Delphine-L/tools-iuc,pavanvidem/tools-iuc,loraine-gueguen/tools-iuc,natefoo/tools-iuc,loraine-gueguen/tools-iuc,Delphine-L/tools-iuc,gvlproject/tools-iuc,abretaud/tools-iuc,abretaud/tools-iuc,jj-umn/tools-iuc,loraine-gueguen/tools-iuc,natefoo/tools-iuc,loraine-gueguen/tools-iuc,pavanvidem/tools-iuc,bimbam23/tools-iuc,gvlproject/tools-iuc,pavanvidem/tools-iuc,natefoo/tools-iuc,dpryan79/tools-iuc,nsoranzo/tools-iuc,gregvonkuster/tools-iuc,nekrut/tools-iuc,pavanvidem/tools-iuc,mblue9/tools-iuc,loraine-gueguen/tools-iuc,bimbam23/tools-iuc,blankenberg/tools-iuc