Fix Bug 1093 and some related problems.
Fix Bug 1093 and some related problems.

copasi/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,copasi/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,copasi/COPASI,jonasfoe/COPASI,copasi/COPASI,copasi/COPASI,copasi/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,copasi/COPASI,copasi/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,copasi/COPASI