fixed an indice bug (count was 0 based and linker was 1 based) and fixed indices bug when the bank was a multi fasta file (ids of the first file were equal to ids of the second and so on)
fixed an indice bug (count was 0 based and linker was 1 based) and fixed indices bug when the bank was a multi fasta file (ids of the first file were equal to ids of the second and so on)

GATB/short_read_connector,GATB/short_read_connector,GATB/short_read_connector