Numerous fixes/additions to the pipeline
Numerous fixes/additions to the pipeline

studies_to_setup now returns the keys to the condition dictionary for analysis and group types

If processing an AC or SC, --makeMultCond won't break (vtsd_logs contain e.g. "MaskedMM_SC" but the dictionaries inserted into info.txt are kept as "MaskedMM"

added --no_unwarp. Use with --setup_preproc to not run unwarping

--local will setup data["mri_dir"] to be /home/scratch/functionals/[subject] so use this if you want to do things locally

running any spm script now blocks the script. If you want parallelism use --ncores

fixed a bug in write_par where all the conditions in BaleenHP would be incremented (instead of just misses)

fully implemented --setup_fs_group

after any meg script, the pipeline makes sure all files in that subject's meg_dir are grouped to lingua

KuperbergLab/MRI_scripts,KuperbergLab/MRI_scripts,KuperbergLab/MRI_scripts,KuperbergLab/MRI_scripts