parse the contig name from the mpileup file with bio fasta parser
parse the contig name from the mpileup file with bio fasta parser

Blahah/transrate,Blahah/transrate,cboursnell/transrate,Blahah/transrate,cboursnell/transrate,roryk/transrate,roryk/transrate,cboursnell/transrate,roryk/transrate