fixed a deletion of TOP_DIR assignment. THis was a mistake
fixed a deletion of TOP_DIR assignment. THis was a mistake

olsonanl/dev_container_kb,PATRIC3/dev_container,PATRIC3/dev_container,olsonanl/dev_container_kb,SEEDtk/seedtk,SEEDtk/seedtk,kbase/dev_container,kbase/dev_container