Remove redundant feature and alignment lookups
Remove redundant feature and alignment lookups

fhieber/incubator-joshua,fhieber/incubator-joshua,thammegowda/incubator-joshua,thammegowda/incubator-joshua,fhieber/incubator-joshua,fhieber/incubator-joshua,fhieber/incubator-joshua,thammegowda/incubator-joshua,fhieber/incubator-joshua,fhieber/incubator-joshua,fhieber/incubator-joshua,thammegowda/incubator-joshua,thammegowda/incubator-joshua,thammegowda/incubator-joshua,thammegowda/incubator-joshua,fhieber/incubator-joshua,thammegowda/incubator-joshua,thammegowda/incubator-joshua,thammegowda/incubator-joshua