-clean option now cleans .../input/ directory not only before compiling        but also *AFTER* running the model.
-clean option now cleans .../input/ directory not only before compiling
       but also *AFTER* running the model.

altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h