The previous version produced incorrect alignments when reference sequence alignment was on the -ve strand. This is fixed here.
The previous version produced incorrect alignments when reference sequence alignment was on the -ve strand.
This is fixed here.

etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,dbolser-ebi/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara