Incomplete fix for Docker build failure; requires Augustus update, but that's not compiling ATM.  Commiting latest work so I can safely put it on hold for a while.
Incomplete fix for Docker build failure; requires Augustus update, but that's not compiling ATM.  Commiting latest work so I can safely put it on hold for a while.

sanger-pathogens/annot-nf,sanger-pathogens/companion,sanger-pathogens/annot-nf,sanger-pathogens/companion,sanger-pathogens/companion,sanger-pathogens/annot-nf