/*
 * This file holds functions specific to the workflow/sra_download.nf in the nf-core/rnaseq pipeline
 */

class WorkflowSraDownload {

    /*
     * Print a warning after SRA download has completed
     */
    public static void sraDownloadWarn(log) {
        log.warn "=============================================================================\n" +
            "  Please double-check the samplesheet that has been auto-created using the\n" +
            "  public database ids provided via the '--public_data_ids' parameter.\n\n" +
            "  All of the sample metadata obtained from the ENA has been appended\n" +
            "  as additional columns to help you manually curate the samplesheet before\n" +
            "  you run the main workflow(s) in the pipeline.\n" +
            "==================================================================================="
    }
}

/*
 * This file holds functions specific to the workflow/sra_download.nf in the nf-core/rnaseq pipeline
 */

class WorkflowSraDownload {

    /*
     * Print a warning after SRA download has completed
     */
    public static void sraDownloadWarn(log) {
        log.warn "=============================================================================\n" +
            "  Please double-check the samplesheet that has been auto-created using the\n" +
            "  public database ids provided via the '--public_data_ids' parameter.\n\n" +
            "  Public databases don't reliably hold information such as strandedness\n" +
            "  information.\n\n" +  
            "  All of the sample metadata obtained from the ENA has been appended\n" +
            "  as additional columns to help you manually curate the samplesheet before\n" +
            "  you run the main workflow(s) in the pipeline.\n" +
            "==================================================================================="
    }
}

Add strandedness info to SRA warning
Add strandedness info to SRA warning
