#
# PAOFLOW
#
# Copyright 2016-2024 - Marco BUONGIORNO NARDELLI (mbn@unt.edu)
#
# Reference:
#
# F.T. Cerasoli, A.R. Supka, A. Jayaraj, I. Siloi, M. Costa, J. Slawinska, S. Curtarolo, M. Fornari, D. Ceresoli, and M. Buongiorno Nardelli,
# Advanced modeling of materials with PAOFLOW 2.0: New features and software design, Comp. Mat. Sci. 200, 110828 (2021).
#
# M. Buongiorno Nardelli, F. T. Cerasoli, M. Costa, S Curtarolo,R. De Gennaro, M. Fornari, L. Liyanage, A. Supka and H. Wang, 
# PAOFLOW: A utility to construct and operate on ab initio Hamiltonians from the Projections of electronic wavefunctions on 
# Atomic Orbital bases, including characterization of topological materials, Comp. Mat. Sci. vol. 143, 462 (2018).
#
# This file is distributed under the terms of the
# GNU General Public License. See the file `License'
# in the root directory of the present distribution,
# or http://www.gnu.org/copyleft/gpl.txt .

def spinor ( l, j, m, spin ):
  # This function calculates the numerical Clebsch-Gordan coefficients of a spinor
  # with orbital angular momentum l, total angular momentum j, 
  # projection along z of the total angular momentum m+-1/2. Spin selects
  # the up (spin=0) or down (spin=1) coefficient.

  import numpy as np
  from mpi4py import MPI

  rank = MPI.COMM_WORLD.Get_rank()

  if spin != 0 and spin != 1:
    if rank == 0:
      print('Spinor - spin direction unknown')
    quit()
  if m < -l-1 or m > l:
    if rank == 0:
      print('Spinor - m not allowed')
    quit()

  denom=1./(2.*l+1.)
  if (abs(j-l-.5) < 1.e-8):
      if spin == 0: spinor = np.sqrt((l+m+1.)*denom)
      if spin == 1: spinor = np.sqrt((l-m)*denom)
  elif abs(j-l+.5) < 1.e-8:
      if m < -l+1:
          spinor=0.
      else:
          if spin == 0: spinor = np.sqrt((l-m+1.)*denom)
          if spin == 1: spinor = -np.sqrt((l+m)*denom)
  else:
    if rank == 0:
      print('Spinor - j and l not compatible')
    quit()

  return spinor

def clebsch_gordan ( nawf, sh_l, sh_j, spol ):
  import numpy as np
  # Transformation matrices from the | l m s s_z > basis to the
  # | j mj l s > basis in the l-subspace
  #
  l = 0
  Ul0 = np.zeros((2*(2*l+1),2*(2*l+1)), dtype=float)
  Ul0[0,1] = 1
  Ul0[1,0] = 1

  l = 1
  Ul1 = np.zeros((2*(2*l+1),2*(2*l+1)), dtype=float)
  j = l - 0.5
  for m1 in range(1, 2*l+1):
      m = m1 - l
      Ul1[m1-1,2*(m1-1)+1-1] = spinor(l,j,m,0)
      Ul1[m1-1,2*(m1-1)+4-1] = spinor(l,j,m,1)
  j = l + 0.5
  for m1 in range(1, 2*l+2+1):
      m = m1 - l - 2
      if (m1 == 1):
         Ul1[m1+2*l-1,2*(m1-1)+2-1] = spinor(l,j,m,1)
      elif (m1==2*l+2):
         Ul1[m1+2*l-1,2*(m1-1)-1-1] = spinor(l,j,m,0)
      else:
         Ul1[m1+2*l-1,2*(m1-1)-1-1] = spinor(l,j,m,0)
         Ul1[m1+2*l-1,2*(m1-1)+2-1] = spinor(l,j,m,1)

  l = 2
  Ul2 = np.zeros((2*(2*l+1),2*(2*l+1)), dtype=float)
  j = l - 0.5
  for m1 in range(1, 2*l+1):
      m = m1 - l
      Ul2[m1-1,2*(m1-1)+1-1] = spinor(l,j,m,0)
      Ul2[m1-1,2*(m1-1)+4-1] = spinor(l,j,m,1)
  j = l + 0.5
  for m1 in range (1, 2*l+2+1):
      m = m1 - l - 2
      if (m1 == 1):
         Ul2[m1+2*l-1,2*(m1-1)+2-1] = spinor(l,j,m,1)
      elif (m1==2*l+2):
         Ul2[m1+2*l-1,2*(m1-1)-1-1] = spinor(l,j,m,0)
      else:
         Ul2[m1+2*l-1,2*(m1-1)-1-1] = spinor(l,j,m,0)
         Ul2[m1+2*l-1,2*(m1-1)+2-1] = spinor(l,j,m,1)

  l = 3
  Ul3 = np.zeros((2*(2*l+1),2*(2*l+1)), dtype=float)
  j = l - 0.5
  for m1 in range(1, 2*l+1):
      m = m1 - l
      Ul3[m1-1,2*(m1-1)+1-1] = spinor(l,j,m,0)
      Ul3[m1-1,2*(m1-1)+4-1] = spinor(l,j,m,1)
  j = l + 0.5
  for m1 in range (1, 2*l+2+1):
      m = m1 - l - 2      
      if (m1 == 1):
        Ul3[m1+2*l-1,2*(m1-1)+2-1] = spinor(l,j,m,1)
      elif (m1==2*l+2):
        Ul3[m1+2*l-1,2*(m1-1)-1-1] = spinor(l,j,m,0)
      else:
        Ul3[m1+2*l-1,2*(m1-1)-1-1] = spinor(l,j,m,0)
        Ul3[m1+2*l-1,2*(m1-1)+2-1] = spinor(l,j,m,1)


  Ul = [Ul0,Ul1,Ul2,Ul3]

  Ul1_alt=np.roll(np.roll(Ul1,-2,axis=0),-2,axis=1)
  Ul2_alt=np.roll(np.roll(Ul2,-4,axis=0),-4,axis=1)
  Ul3_alt=np.roll(np.roll(Ul3,-6,axis=0),-6,axis=1)

  Ul_alt = [Ul0,Ul1_alt,Ul2_alt,Ul3_alt]  

  # Build the full transformation matrix

  occ = [2,6,10,14]

  ntot = 0
  for n in range(len(sh_l)):
      ntot += occ[sh_l[n]]
  if ntot != nawf:
    raise ValueError('Wrong number of shells when creating \'Sj\'')

  Tn = np.zeros((ntot,ntot), dtype=float)

  
  n = 0
  for l in range(len(sh_l)):
    if sh_l[l]==0:
      Tn[n:n+occ[sh_l[l]],n:n+occ[sh_l[l]]] = Ul[sh_l[l]]
    else:
      if (sh_l[l]-sh_j[l])>0.0:
        # the case when j are sorted in ascending order in the pseudo
        Tn[n:n+occ[sh_l[l]],n:n+occ[sh_l[l]]] = Ul[sh_l[l]]
      else:
        # the case when j are sorted in descending order in the pseudo
        Tn[n:n+occ[sh_l[l]],n:n+occ[sh_l[l]]] = Ul_alt[sh_l[l]]

    n += occ[sh_l[l]]

  # Pauli matrices (x,y,z) 
  sP=0.5*np.array([[[0.0,1.0],[1.0,0.0]],[[0.0,-1.0j],[1.0j,0.0]],[[1.0,0.0],[0.0,-1.0]]])

  # Spin operator matrix  in the basis of |l,m,s,s_z>
  Sl = np.zeros((nawf,nawf), dtype=complex)
  for i in range(0, nawf, 2):
      Sl[i,i] = sP[spol][0,0]
      Sl[i,i+1] = sP[spol][0,1]
      Sl[i+1,i] = sP[spol][1,0]
      Sl[i+1,i+1] = sP[spol][1,1]

  # Spin operator matrix  in the basis of |j,m_j,l,s>
  Sj = np.zeros((nawf,nawf), dtype=complex)
  Sj = np.dot(Tn, Sl).dot(Tn.T)

  return Sj
