add kmer6-decoder

kmer6-decoder/config.json

@@ -0,0 +1,32 @@
+{
+  "activation_function": "gelu_new",
+  "architectures": [
+    "GPT2LMHeadModel"
+  ],
+  "attn_pdrop": 0.1,
+  "bos_token_id": 2,
+  "embd_pdrop": 0.1,
+  "eos_token_id": 3,
+  "initializer_range": 0.02,
+  "layer_norm_epsilon": 1e-05,
+  "model_type": "gpt2",
+  "n_embd": 256,
+  "n_head": 4,
+  "n_inner": 1024,
+  "n_layer": 6,
+  "n_positions": 96,
+  "pad_token_id": 0,
+  "reorder_and_upcast_attn": false,
+  "resid_pdrop": 0.1,
+  "scale_attn_by_inverse_layer_idx": false,
+  "scale_attn_weights": true,
+  "summary_activation": null,
+  "summary_first_dropout": 0.1,
+  "summary_proj_to_labels": true,
+  "summary_type": "cls_index",
+  "summary_use_proj": true,
+  "torch_dtype": "float32",
+  "transformers_version": "4.46.3",
+  "use_cache": true,
+  "vocab_size": 15630
+}

kmer6-decoder/eval_results.json

@@ -0,0 +1,10 @@
+{
+  "eval_loss": 2.6511454582214355,
+  "eval_masked_accuracy": 0.5854349738889968,
+  "eval_next_token_count": 87511,
+  "eval_runtime": 0.2825,
+  "eval_samples_per_second": 7079.03,
+  "eval_steps_per_second": 14.158,
+  "epoch": 1.0,
+  "eval_perplexity": 14.170260794431945
+}

kmer6-decoder/generation_config.json

@@ -0,0 +1,7 @@
+{
+  "_from_model_config": true,
+  "bos_token_id": 2,
+  "eos_token_id": 3,
+  "pad_token_id": 0,
+  "transformers_version": "4.46.3"
+}

kmer6-decoder/model.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:41511c3d035ca36f2984226e7a92019fa2d68e4e1e372e69db5fc5a78bf34fe7
+size 35067200

kmer6-decoder/model_config.json

@@ -0,0 +1,88 @@
+{
+  "vocab_size": 15630,
+  "n_positions": 96,
+  "n_embd": 256,
+  "n_layer": 6,
+  "n_head": 4,
+  "n_inner": 1024,
+  "activation_function": "gelu_new",
+  "resid_pdrop": 0.1,
+  "embd_pdrop": 0.1,
+  "attn_pdrop": 0.1,
+  "layer_norm_epsilon": 1e-05,
+  "initializer_range": 0.02,
+  "summary_type": "cls_index",
+  "summary_use_proj": true,
+  "summary_activation": null,
+  "summary_first_dropout": 0.1,
+  "summary_proj_to_labels": true,
+  "scale_attn_weights": true,
+  "use_cache": true,
+  "scale_attn_by_inverse_layer_idx": false,
+  "reorder_and_upcast_attn": false,
+  "bos_token_id": 2,
+  "eos_token_id": 3,
+  "return_dict": true,
+  "output_hidden_states": false,
+  "output_attentions": false,
+  "torchscript": false,
+  "torch_dtype": "float32",
+  "use_bfloat16": false,
+  "tf_legacy_loss": false,
+  "pruned_heads": {},
+  "tie_word_embeddings": true,
+  "chunk_size_feed_forward": 0,
+  "is_encoder_decoder": false,
+  "is_decoder": false,
+  "cross_attention_hidden_size": null,
+  "add_cross_attention": false,
+  "tie_encoder_decoder": false,
+  "max_length": 20,
+  "min_length": 0,
+  "do_sample": false,
+  "early_stopping": false,
+  "num_beams": 1,
+  "num_beam_groups": 1,
+  "diversity_penalty": 0.0,
+  "temperature": 1.0,
+  "top_k": 50,
+  "top_p": 1.0,
+  "typical_p": 1.0,
+  "repetition_penalty": 1.0,
+  "length_penalty": 1.0,
+  "no_repeat_ngram_size": 0,
+  "encoder_no_repeat_ngram_size": 0,
+  "bad_words_ids": null,
+  "num_return_sequences": 1,
+  "output_scores": false,
+  "return_dict_in_generate": false,
+  "forced_bos_token_id": null,
+  "forced_eos_token_id": null,
+  "remove_invalid_values": false,
+  "exponential_decay_length_penalty": null,
+  "suppress_tokens": null,
+  "begin_suppress_tokens": null,
+  "architectures": [
+    "GPT2LMHeadModel"
+  ],
+  "finetuning_task": null,
+  "id2label": {
+    "0": "LABEL_0",
+    "1": "LABEL_1"
+  },
+  "label2id": {
+    "LABEL_0": 0,
+    "LABEL_1": 1
+  },
+  "tokenizer_class": null,
+  "prefix": null,
+  "pad_token_id": 0,
+  "sep_token_id": null,
+  "decoder_start_token_id": null,
+  "task_specific_params": null,
+  "problem_type": null,
+  "_name_or_path": "",
+  "_attn_implementation_autoset": false,
+  "transformers_version": "4.46.3",
+  "model_type": "gpt2"
+}

kmer6-decoder/special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

kmer6-decoder/tokenizer_config.json

@@ -0,0 +1,57 @@
+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "[UNK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "[CLS]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "[SEP]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "4": {
+      "content": "[MASK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": false,
+  "mask_token": "[MASK]",
+  "model_max_length": 1000000000000000019884624838656,
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": false,
+  "tokenize_chinese_chars": false,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}